Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0925 ATGAGATCCAGGTCGCGCCGTGTGGTGCAGGACGGTTCCTCAATGGAGGAGCCGGTCTCTGATGGCTTGAAGCAGAGTTCCTGGGCTCACATGCCTCAGGAGCTTCTCAGGGAGGTTTTGCTCCTAATTGAGGACTCCGAGAGCTCTTGGCCGCCGCGCAAGAGTGTAGTGGCCTGCGCTGGAGTGTGCCGGAGTTGGAGGGAGATCACCAAGGAGATAGTCAAGCCGCCGGAAGTTTCCGCCAAGATCACGTTCCCGATCTCCATTAAGCAGCCTGGCCCCAGAGATCATCTTCTTCAGTGCTTTATAAAGCGCAACCGTTCTTCCCAGACGTATTACTTGTTTCTCAGCTTAACTAGTGCTCTAGCTGATGATGGGAAGTTCCTTTTGGCTGCACGCAAGTGCAGGCGTCCAACCTGCACGGATTATATCATCTCTCTAGATGCCGATGATATGTCAAATGGAAGCTACACCTATATCGGGAAGCTGCGGTCAAATTTTCTGGGGACAAAGTTCACAATATATGATGGTCAGCAACCTCATTCAGGCGCAAAAATTTCTAAAAGTCGGTCCACTAGGCTGGTGAATCTGAAGCAAGTTTCACCCCGGGTCCCCACTGGTAACTACCCAGTGGCCCACATTTCATATGAATTAAATGTGTTAGGCTCCAGGGGGCCTAGGAGAATGAATTGTGTCATGGATTCCTTTCCTGCCTGTGCAATTGAACCAGGAGGGGTAGCGCCGACACAGACTGACTTTTCTCTAGGCCACATTGATGTGTTTCCTTCATTTCCATTTTTCCGGTCAAAATCAAATCACATGGAAAAATCCGAATATGGGCCCCTGGGTGATAAAAAAGATGGGTAG 867 0.5006 MRSRSRRVVQDGSSMEEPVSDGLKQSSWAHMPQELLREVLLLIEDSESSWPPRKSVVACAGVCRSWREITKEIVKPPEVSAKITFPISIKQPGPRDHLLQCFIKRNRSSQTYYLFLSLTSALADDGKFLLAARKCRRPTCTDYIISLDADDMSNGSYTYIGKLRSNFLGTKFTIYDGQQPHSGAKISKSRSTRLVNLKQVSPRVPTGNYPVAHISYELNVLGSRGPRRMNCVMDSFPACAIEPGGVAPTQTDFSLGHIDVFPSFPFFRSKSNHMEKSEYGPLGDKKDG 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0925 288 PRINTS Tubby superfamily signature 143 159 IPR000007 -
Lele48g0925 288 PRINTS Tubby superfamily signature 159 183 IPR000007 -
Lele48g0925 288 PRINTS Tubby superfamily signature 208 235 IPR000007 -
Lele48g0925 288 PANTHER TUBBY-RELATED 14 250 - -
Lele48g0925 288 Pfam Tub family 90 259 IPR000007 -
Lele48g0925 288 Gene3D Tubby Protein; Chain A 88 278 IPR025659 -
Lele48g0925 288 Gene3D - 21 74 - -
Lele48g0925 288 MobiDBLite consensus disorder prediction 1 23 - -
Lele48g0925 288 SUPERFAMILY Tubby C-terminal domain-like 77 257 IPR025659 -
Lele48g0925 288 Pfam F-box domain 28 74 IPR001810 GO:0005515
Lele48g0925 288 SUPERFAMILY F-box domain 13 71 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0925 Lele-ChrLele48 14429280 14431530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0925 2 259 TUB Transcription Factor Family AT2G47900 69.231 8.95e-131 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele48g0925 Tub 7.6e-56 CL0395