Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0872 ATGGCACTTCTGCAAAACTCTCAAGTTCTGTTTCCCAGATGGTTCGCCATTTCAGAACCATCAATCTCCAAGACCCTGTTTCTAAGACTCCCACTGTGTCCAATGTTTACTTCACTATCAATTTCCATTCCTGCCTCATCCCCCACTCTTCGCTGCCACTGCTGCTGTTTCAGCTTCAATTCTTCTGCTGAATTCAGTATTTCTTCTCGGGCCAAAGTCTTCATCAAAGGGCTTCCTCTGTCAACTACTGGAGGACGTTTGGTCAAGGCATTTTCAGAGTTTGGTGAAGTTACTCAAGTAAAGCTTCTCATGGATAAAGAATCTGGGCAGTTCCTAGGTATTGCATACATTTGGTTTGCCAAGGAAGAGTCTGCACAATTGGCTGTGGAACAGATGAATGGGAAGTTCTTCGATGGCAGGTTTATTGATGTCAGAATTTCGAGGGCTGGATCATCAAAAAATGGGAGGAAAACAGCTCCATACAAGTTTTGA 492 0.439 MALLQNSQVLFPRWFAISEPSISKTLFLRLPLCPMFTSLSISIPASSPTLRCHCCCFSFNSSAEFSISSRAKVFIKGLPLSTTGGRLVKAFSEFGEVTQVKLLMDKESGQFLGIAYIWFAKEESAQLAVEQMNGKFFDGRFIDVRISRAGSSKNGRKTAPYKF 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0872 163 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 149 IPR000504 GO:0003723
Lele48g0872 163 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 66 156 - -
Lele48g0872 163 SUPERFAMILY RNA-binding domain, RBD 66 153 IPR035979 GO:0003676
Lele48g0872 163 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 142 IPR000504 GO:0003723
Lele48g0872 163 CDD RRM_SF 73 145 - -
Lele48g0872 163 Gene3D - 48 160 IPR012677 -
Lele48g0872 163 SMART rrm1_1 72 145 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0872 Lele-ChrLele48 14054491 14057059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0872 60 160 Eukaryotic Initiation Factors Gene Family AT1G22760 30.097 2.89e-09 53.1