Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0867 ATGGGAATTTCTTCGAGTAGCGGAAGAATAAGCAATTATTTCCATAGCCCACATCTTCCACCACCTTTCTATTACTCGGCAGAATCTCCTCCTCCTTCACCGCCGCCGCCTCAAGGCTACTATTTCTCCTCATCAACGCCTTATGCACTGGAAAGCAACAACTATGTGCCTCCCCCTCCTCAGACCCATATCTTCTGTTATTCAAATGTGTATAGCAATTGTTCCAATTTTTCTAATTCTATGGTCGTTAGTTTTCAGTATCCCCCATCTTATTATGTAAATCATGCTAATGGGTGGCCTGCAATTTATCCTTCGGTTGGTCCGGAGATCTCGCCACCGCCCTATGTTGATCATCGAACGGCTAAGAAGATCAGGAACGATGTGAACGTGCATAAAGATACATTGCGGCTGGAGGTAGATGAGCATTACCCTGATCAGCGCTTGGTTTCATTCGTTTTCGATGCCTTACATGAAGGGAGCATTACTATAATCTACTTTGCAAAGGAGGAGGAAAAATGTAGGTTTGTACCATTGTTTCCCAATGTATTTGACCCAATAAGAATCCCTTTTCAGAAAGGAATAGGCCAGAAATTTTGTCAGCCTTCAGGAACAGGCATTGACAAAGGGTTTTTCGAGTTGGATGATCTGTCAAAACTCTCACTTGGAGATGATGTCTTCCCCCTTGTGATATGTGCTGAAACATGTTTGATAACTTCATCGGCAGAAGAAAATCTTGGCACTTCCATGCTAGATTTTTCTCCTTGCATGCAGATTACTCAAGCCATCGTAGAAAAAGGCAATGGCGATGGTCCTTTACAAGTAAAAGTAGACAGGCAGATTCTGTGGATTGATGGGGTCCGTTATGAGTTAAGAGAGTTATATGGAATGGGAGGCTCAGCAGCAGCTGATTTTGATGACAATGATTCTGGGAAGGAGTGCGTAATATGCATGACTGAACCAAAGGACACAGCTGTATTACCATGTCGACACTTGTGCATGTGCAGTGACTGCGCACAGGCGTTGTGGCTTCAATCGAATAAATGCCCAATATGTCGTCAATCTATCAAGGAACTTATAGAAATTAAGATAAAAAATGGTGATCATTGGGATCTTAGATGTCAGGTGATGTATAGAAAATTCCATTTGTTGATGAATAAGAGTATAAAGGAAAAAAGACAAGATTCCAGTTGTTGGAGGTTGATTTCTTTTTCACTTACAGCAATAAAGAGTTTGAAGCTAATATTGCCTTACAAGTTAGCATTTCTGTTGGACCAAGTTCAGAATCTTCTAAGCTTGTATAGGTCAGAGGCTGCCAACTTTTATGAGCAGGATTCTTTAGTAGACTTGGTGCGTAATATGAACAGATTAAAGTAA 1374 0.4127 MGISSSSGRISNYFHSPHLPPPFYYSAESPPPSPPPPQGYYFSSSTPYALESNNYVPPPPQTHIFCYSNVYSNCSNFSNSMVVSFQYPPSYYVNHANGWPAIYPSVGPEISPPPYVDHRTAKKIRNDVNVHKDTLRLEVDEHYPDQRLVSFVFDALHEGSITIIYFAKEEEKCRFVPLFPNVFDPIRIPFQKGIGQKFCQPSGTGIDKGFFELDDLSKLSLGDDVFPLVICAETCLITSSAEENLGTSMLDFSPCMQITQAIVEKGNGDGPLQVKVDRQILWIDGVRYELRELYGMGGSAAADFDDNDSGKECVICMTEPKDTAVLPCRHLCMCSDCAQALWLQSNKCPICRQSIKELIEIKIKNGDHWDLRCQVMYRKFHLLMNKSIKEKRQDSSCWRLISFSLTAIKSLKLILPYKLAFLLDQVQNLLSLYRSEAANFYEQDSLVDLVRNMNRLK 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0867 457 SMART ring_2 313 351 IPR001841 -
Lele48g0867 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 362 IPR013083 -
Lele48g0867 457 ProSiteProfiles Zinc finger RING-type profile. 313 352 IPR001841 -
Lele48g0867 457 PANTHER MAHOGUNIN 30 362 IPR045194 GO:0061630
Lele48g0867 457 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 312 352 IPR045195 -
Lele48g0867 457 SUPERFAMILY RING/U-box 307 358 - -
Lele48g0867 457 FunFam probable E3 ubiquitin-protein ligase LOG2 297 362 - -
Lele48g0867 457 Pfam Zinc finger, C3HC4 type (RING finger) 311 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0867 Lele-ChrLele48 14005848 14009013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0867 88 367 C3H Transcription Factor Family AT3G06140 57.986 1.62e-102 308