Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0864 ATGTGCATAAGAAAGAGCACAGAATGCGTATATGGATGTATATATATATGTAAAACAAGACCAGAAGATATGTCTCACATAGCTGTCGAGAGGAACAGGAGAAGACAGATGAACGAGCATCTCAAAGTTTTAAGGTCTTTGACCCCTTGTTTCTATATTAAAAGGGGAGACCAAGCATCAATAATCGGGGGAGTGATAGAGTTCATAAAGGAGTTACACCAAGTTCTGGAAGTTCTGGAATCGAAGAAAAGAAGGAGAAAGAGTGTAAGCCCTAGCCCAAGAACACCACTGCCGCCGCCACCAGCAAGCAGCTTGAAGGAGGAAATTGGAGCAGCAAGCTGTAATTCTTCAGTTGCAGATGTGCAAGTGAAAATCACAGGCTCAAACGTGATCCTTAGAGTGATTTGCCAGAGAGTTGCAGGTCAAGTTTCAAAGATAATCAGTGTTCTTGAGAGGCTCTCTTTTGAAGTCCTTCATCTCAATATCAGTAGCATGGAGGATACAGTTCTATACAACTTTGTTGTCAAGATAGGGTTGGAGTGCCAGTTGAGTCTAGAGGAACTAGCAGTGGGAGTACAGCAAACTTTCTGCGGTCAGAAGCTGTTAACTACCACAATGTGA 621 0.4283 MCIRKSTECVYGCIYICKTRPEDMSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVLEVLESKKRRRKSVSPSPRTPLPPPPASSLKEEIGAASCNSSVADVQVKITGSNVILRVICQRVAGQVSKIISVLERLSFEVLHLNISSMEDTVLYNFVVKIGLECQLSLEELAVGVQQTFCGQKLLTTTM 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0864 206 CDD bHLH_AtFAMA_like 24 87 - -
Lele48g0864 206 Gene3D - 17 88 IPR036638 GO:0046983
Lele48g0864 206 PANTHER TRANSCRIPTION FACTOR FAMA 22 196 IPR044283 GO:0003700|GO:0010052
Lele48g0864 206 Pfam Helix-loop-helix DNA-binding domain 24 72 IPR011598 GO:0046983
Lele48g0864 206 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 21 72 IPR011598 GO:0046983
Lele48g0864 206 FunFam Transcription factor MUTE 24 90 - -
Lele48g0864 206 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 24 95 IPR036638 GO:0046983
Lele48g0864 206 SMART finulus 27 78 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0864 Lele-ChrLele48 13953011 13955156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0864 24 205 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 61.386 9.08e-80 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele48g0864 HLH 4.3e-08 No_clan