Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0829 ATGGGATGGGATAGTCTGCATTTTGATTTATATGATAGCATAATCGGAGAATTTCAGGGCATGTTTTGTGGGGGTCCCCTTCCTGGTCCCTTTAGTAGTCATCAATGGGGCAAGGTAAATGATTTGATTCAGGCCCGTCTGACTGATTGGTGTTGTGTTTTTTTAGTTCAACTTTCCTTTTATTTCCATGAGACTTATTTTGAAGTTGGCTGTCATTGGTGTTCAGTTTCTGGTGTTCAAAGCCTTTCTTCCAGTGTGCAAAGCACTCCGGAAAAAAATGGTCATTCAGATGATGCTTCAAGAAGTCTTGAACTCCTTCAAGAGTTCTTGAAACCTGGTCCTAAGAAGGAACTTCTTCGAGCGTGCTTTTATAAGGACCGAAAGAACATTTCATCAAAAAGAAAGATGCCAGAAACTAAGTTGACAAGTAAGGTTGTCAAGAAACAGGACAACAAGAAGGTTTCTACTCTCAGCAACCAGCCCTCTAGGAAGCAGCATAGGAAGAGCAAAAACCCTACTAGGCTCAAGCCAGTTCCTGACGAGCCTTCCAATTCTAGACATTCAGACTCCTGGATCTGTAAAAACTCTGCTTGTAGGGCCTTTCTATCTGCAGATGACAAATTTTGTAGAAGGTGCTCGTGCTGTATTTGTCACCTATTTGATAGTAATAAGGATCCTAGTCTTTGGTTGGTATGCTCATCTGAATCCAATGAAGGGGACTCCTGTGGGTTTTCTTGCCATATTGAGTGTGCCCTTCAACATGAAAAAGTGGGAGTTGTTGATCATGGGCAACTGATGCAACTAGATGGTGGCTATTGTTGTGCATCCTGTGGTAAAGTTACAGGGATACTTAGATGTTGGAAGAAGCAGCTAAATATGGCAAAAGATGCTCGGCGAGTTGATGTGCTCTGTTATAGGTTATATTTGAGTTACAGGCTCTTGGATGGGACTTCGAGGTTTAAAGAGTTGCATGACATTGTACTTGAGGCAAAAGCGAAGCTAGAAACAGAAGTTGGTCCAGTTAATGGGACTTCTGATAAGATGGTGCGAGGCATTGTCAGCAGACTCTCTATTGCCAGTGAGGTGCAGAAACTCTGCTCCCTTGCAATTGAGAAAGCTGAGGGGTGGTCTTCCGTTGTGAATCCGGATTCCATAGATGGTTCACTTCCTCCTGCCTGCAAATTTGTTTTTGAAGAGGTAACGGCTTCCTCAGTGAAAATCATTTTGATTAACAAGTCCACTGCATCTTCTAAGGACACTAAGGGCTACAAGCTCTGGTACTACAAGAGTAATGAGGAGTTGCTCGCAACTGATCCTGTTTGTGAGTTCCCAAATAATCAGAAGAGGATTCTGTTATCCAACCTCCAGCCGGGCACAGAATATACTTTTCGCATTATATCTTATACAGATATGGGTCAGCTGGGTTATTCTGAAGCCAAGTGTTTCACCAAGAGCGCGGATCCAGCTAAAAAAGGTTCCTCTTTACCAATTGATTTAGGTCGTAAAAAAGAGAACCTTGAAATTGGAGCCAGTTCATCTGGCTCCAAAACAGAGCCCAATCCTACAGTAGAAGATTCAGGATTTAAGGTTCGAGACCTTGGGAAAGTTGTGGGTCGTCCTTGGGCTAAAGATCAAGGTCCCTTGGAAGGGTTTTGCACTGTTGATACAAAAAATTGCTGCAGGGAAACCGAAATGGTCAAGCCTAAAATTTCAGAAGAGCAGTTGCCTGTGGTTTCACGGGGTCTTGATTTAAATGTTGTTTCAGTGCCTGATCTAAATGAAGAACTCGTCCCTCCTTTTGAGTCTTCCAAGGACGAAGATAATGGCTGCACTTTGCAGAAGGCTGTTGAGGCAGACGATGATGCTGCTTCTCGGTATGCGCAGAAAATCAGTTTAGCAAAATCAAATGGTAGTGGTGATTCCCATACCTGGATGAACGGGCCAACTGGAGAAGTTCCAACCGTTGACTCCCGCGTAGACGCATGCAAGAAAAGGGTAGCTTGCATAAACGAAGAGACACACGATTGCAATAGCACTTTGGTGAACGGCTCTCCTCTCGGAGTATCAGATGGAACATGCTCCCTGGATGAAAACTACGAGTATTGCGTGAAAGTATTTCGGTGGCTAGAATGTGAGGGTCACATCAAGCAGGAATTTCGGTTGAAGTTGCTAACATGGTTTAGTTTGAGGTCAACGGAGCAGGAACGCAGGGTTGTGAATACCTTCATTCAAACTCTGCTTGATGATCCATCTAGTTTGGCAGGGCAACTGATAGACTCATTTTCTGATATCATATCCAACAAGAGGCTCAGAAATGGATAG 2322 0.4367 MGWDSLHFDLYDSIIGEFQGMFCGGPLPGPFSSHQWGKVNDLIQARLTDWCCVFLVQLSFYFHETYFEVGCHWCSVSGVQSLSSSVQSTPEKNGHSDDASRSLELLQEFLKPGPKKELLRACFYKDRKNISSKRKMPETKLTSKVVKKQDNKKVSTLSNQPSRKQHRKSKNPTRLKPVPDEPSNSRHSDSWICKNSACRAFLSADDKFCRRCSCCICHLFDSNKDPSLWLVCSSESNEGDSCGFSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILRCWKKQLNMAKDARRVDVLCYRLYLSYRLLDGTSRFKELHDIVLEAKAKLETEVGPVNGTSDKMVRGIVSRLSIASEVQKLCSLAIEKAEGWSSVVNPDSIDGSLPPACKFVFEEVTASSVKIILINKSTASSKDTKGYKLWYYKSNEELLATDPVCEFPNNQKRILLSNLQPGTEYTFRIISYTDMGQLGYSEAKCFTKSADPAKKGSSLPIDLGRKKENLEIGASSSGSKTEPNPTVEDSGFKVRDLGKVVGRPWAKDQGPLEGFCTVDTKNCCRETEMVKPKISEEQLPVVSRGLDLNVVSVPDLNEELVPPFESSKDEDNGCTLQKAVEADDDAASRYAQKISLAKSNGSGDSHTWMNGPTGEVPTVDSRVDACKKRVACINEETHDCNSTLVNGSPLGVSDGTCSLDENYEYCVKVFRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLLDDPSSLAGQLIDSFSDIISNKRLRNG 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0829 773 MobiDBLite consensus disorder prediction 134 151 - -
Lele48g0829 773 Pfam Fibronectin type III domain 394 476 IPR003961 GO:0005515
Lele48g0829 773 Pfam PHD - plant homeodomain finger protein 193 311 IPR032881 -
Lele48g0829 773 MobiDBLite consensus disorder prediction 134 189 - -
Lele48g0829 773 CDD FN3 394 483 IPR003961 GO:0005515
Lele48g0829 773 MobiDBLite consensus disorder prediction 508 522 - -
Lele48g0829 773 PANTHER VIN3-LIKE PROTEIN 2-RELATED 82 773 IPR044514 GO:0010048|GO:0040029
Lele48g0829 773 SUPERFAMILY Fibronectin type III 399 483 IPR036116 GO:0005515
Lele48g0829 773 MobiDBLite consensus disorder prediction 508 527 - -
Lele48g0829 773 ProSiteProfiles Fibronectin type-III domain profile. 390 488 IPR003961 GO:0005515
Lele48g0829 773 Gene3D Immunoglobulins 387 494 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0829 Lele-ChrLele48 13642778 13646716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0829 190 773 PHD Gene Family AT3G24440 47.148 4.74e-168 496
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g0611 45 4997819 5001330 Lele48g0829 48 13642778 13646716 hybridization
Lele46g0651 46 4702957 4706879 Lele48g0829 48 13642778 13646716 hybridization