Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0819 ATGGACAATATTGTGGAAGATGATGCAACGTACCCTCGAAAGCCCTACGTTTCGAACCGTCCTAACTATTCCCATCACCAAGAGCATTTGATTCGCGCCGCTCCGTATCATCGCCCAGTTATTAGTCGGTACGACGAGGACGGTGAAGATGAAGAAATGGATGAATATGATGTAGGGCATGACCAGGAGGATGACGATGGTGATGGGGAGAATGGTTATGGTATGAATATTGATAGCGATGACGGGTTTGAGAGAACCCCGAAGAAAAGGAAGTTGCGGAATCCATCTGTTTTGAACTATGAATTGGTTCCTCATGAGAAGCTTTCGCACGGGAATCGAAGCCCAACAGATGAATGGACTGAGCATGCGACGTTTGTTCTGCTAGAGGTTTGGGGGGACAAATTTCTTCAACTTGGGAGAAAGAGCTTAAGGTCTGAGGATTGGCATGATGTGGCCGAGAAGTTTTCGGAGGAGCTGAAGATGGAGAGGACCATGGCACAATGTAGGAACATGTTGGATAAACTGAAAAGAAGGTACAAGAAAGAGAAAGCGAAAATGGATGGAATGGGGTTGAATTCTAGTAAATGGGCATATTTTAAGAAGATGGATATGTTAATGGCTTCATCAGTGAGGCAAGAATATGGACTTTCCTGTGGAATGGATTCTGGGGAGTATGTTTTCATGAATACAAGGGTTTATTTAGATCGATCCAATGGGTTGGATGAGATGAGAGATAGCCCTGGGGAGTCAGAGATGTCTGAAGATGATTCAGATGGGCTTCCGCCGAGGAGGACTAGGACTGTGGACAATGAATTGGAAGAGTCATCCTTTAGGGAATTGGCGGATTCTATTCAGAAGTTTGGTAAAATATATGAGAAAATTGAGAATCGTAAGAGGCGGCAGATGATGGAGTTAGAGAAGATGAGATTGGATTTTAATAGGGAGTTAGAGCTGCAGAAGAAGCAGATTTTGGAAAGAGCTCAGGCTGAAATTGCAACCTTGCAAGAAGGAGATGAGGAGGATACCGAAACATCTGCTGAGAATGTCAGTGAATGA 1056 0.4422 MDNIVEDDATYPRKPYVSNRPNYSHHQEHLIRAAPYHRPVISRYDEDGEDEEMDEYDVGHDQEDDDGDGENGYGMNIDSDDGFERTPKKRKLRNPSVLNYELVPHEKLSHGNRSPTDEWTEHATFVLLEVWGDKFLQLGRKSLRSEDWHDVAEKFSEELKMERTMAQCRNMLDKLKRRYKKEKAKMDGMGLNSSKWAYFKKMDMLMASSVRQEYGLSCGMDSGEYVFMNTRVYLDRSNGLDEMRDSPGESEMSEDDSDGLPPRRTRTVDNELEESSFRELADSIQKFGKIYEKIENRKRRQMMELEKMRLDFNRELELQKKQILERAQAEIATLQEGDEEDTETSAENVSE 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0819 351 Coils Coil 291 322 - -
Lele48g0819 351 MobiDBLite consensus disorder prediction 46 71 - -
Lele48g0819 351 MobiDBLite consensus disorder prediction 330 351 - -
Lele48g0819 351 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 96 338 IPR044823 -
Lele48g0819 351 Coils Coil 158 192 - -
Lele48g0819 351 Pfam Myb/SANT-like DNA-binding domain 117 204 IPR044822 -
Lele48g0819 351 MobiDBLite consensus disorder prediction 25 45 - -
Lele48g0819 351 MobiDBLite consensus disorder prediction 334 351 - -
Lele48g0819 351 MobiDBLite consensus disorder prediction 238 275 - -
Lele48g0819 351 MobiDBLite consensus disorder prediction 1 91 - -
Lele48g0819 351 MobiDBLite consensus disorder prediction 256 275 - -
Lele48g0819 351 Gene3D - 119 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0819 Lele-ChrLele48 13497679 13498734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0819 117 340 Trihelix Transcription Factor Family AT1G54060 31.086 2.63e-20 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lele48g0819 Myb_DNA-bind_4 4.5e-19 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g0619 45 5104648 5105706 Lele48g0819 48 13497679 13498734 hybridization
Lele46g0662 46 4833947 4835002 Lele48g0819 48 13497679 13498734 hybridization