Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0817 ATGCCTAGCCGATCAACTGGAACAATAGCGCAAGATTGGGATCCGGTGGTTCTGCACAAGAACAAACCCAAGGCTCAGGACCTGCGAAATCCGAAGGCCGTGAATCAGGCACTCCGGTCAGGAGTTGAGGTTCAGACGGTCAAGAAGTTCGACGCTGGTTCGAATAAGAAAACTGCTTCGGTCGTGAACACGAGGAAGCTCGATGAAGAAACAGAGCCTGCTGCTCTGGAGAAGGTAAGAACAGAGGTGAGAACAGCTATACAGAAGGCAAGATTGGAGAAGAAGATGAGTCAGGCGGATCTTGCGAAGCAGATCAACGAGCGGCCACAGGTAGTGCAGGAGTACGAGAACGGGAAAGCTGTTCCGAATCAAGCCGTGCTGGCGAAGATGGAGAGAGTTCTGGGCGTTAAACTGAGAGGAAAGGTAGGCGGAAAGTGA 438 0.5205 MPSRSTGTIAQDWDPVVLHKNKPKAQDLRNPKAVNQALRSGVEVQTVKKFDAGSNKKTASVVNTRKLDEETEPAALEKVRTEVRTAIQKARLEKKMSQADLAKQINERPQVVQEYENGKAVPNQAVLAKMERVLGVKLRGKVGGK 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0817 145 SUPERFAMILY lambda repressor-like DNA-binding domains 82 138 IPR010982 GO:0003677
Lele48g0817 145 SMART mbf_short4 86 141 IPR001387 -
Lele48g0817 145 Gene3D - 72 145 IPR010982 GO:0003677
Lele48g0817 145 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 11 141 - -
Lele48g0817 145 FunFam Multiprotein bridging factor 1 71 144 - -
Lele48g0817 145 CDD HTH_XRE 86 138 IPR001387 -
Lele48g0817 145 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Lele48g0817 145 Pfam Multiprotein bridging factor 1 11 79 IPR013729 -
Lele48g0817 145 Coils Coil 87 107 - -
Lele48g0817 145 Pfam Helix-turn-helix 87 138 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0817 Lele-ChrLele48 13484633 13485070 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Lele48g0817 MBF1 4.7e-22 No_clan