Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0808 ATGGAGCAGAACGACGTGGTTCCACCGTTCGTTTTGAAGACTTTTCATATGGTTACCGATCCAACCACCGATGCTTTCATCACTTGGGGTCGATCCAACAATAGCTTCATCGTCGTCGATCCTTTGGATTTCTCTCGGATGATCCTTCCTGCATATTTCAAGCACAACAACTTCTCCAGCTTCGTTCGTCAGTTAAACACCTACGGGTTTAGAAAGGTGGATCCAGATCGATGGGAATTCGCGAACGAGTGGTTTCTTCGGGGGCAGAAGCACTTGTTGAAGAATATTGTGAGGAGGAAACAAAGTAGGAGTAGTAGTTGTTCTTTTTCGTTGTTTCAGGGGAAGAATAATGAGGAGGTGGAAGACGAAGCGTTGATGATGGAGATTGCGAGGTTGAAGGAAGAGCAGAAATCTTTGGAGGAAGAACTTCAAGGGATGAATAAGAGATTGGAGACAACAGAGAAACGACCTCAGCAAATGATGGCGTTTCTGTACAAAGTCGTGGAGGATCCAAACGTCCTTTCTCGGATTTTGTTGGAGAAAGACCAGAAGCAATTGGGAGAGAAGAAACGGCGGTTGATATCGTCATCATCGCCGTCGTCTTCGTATGGTATGGCGGCGGTGAAGACTGAGTTTGAAGAAGAGGAAGCTACTTTGGGTAGTGCGATAATATCTTCGCCGTTGCCTGAAACGACTACTACTGGTTTTGAGTTCGGTCGTTATAGTCAGGCACCGCCGACGACGGAGGAAACAATAATCTCCGGCACCGATACGAGTTCGGGTTGGTGGAGCGAGAGAAACGATGCTATAAGGGTGAGGCCTCGGACAAATCAACAAGCTTATAATAATTGGTCATCAAGCCCGTTGACGGCGGTTGTGGCGGCGAGAATGGATGAGAAAGCGTCGGCGATGATGTCGATGTCGGCGCTTGAGGGAGAACGCAATTCGGGGAGAGAGGAGCAAAGGAGCTATTTTACAGAAATGCCGGCGGAGAACAGTCCACGGCCACCTTATCCATTTTCGCTGTTGGAAGGTGGCTTTTAG 1044 0.4818 MEQNDVVPPFVLKTFHMVTDPTTDAFITWGRSNNSFIVVDPLDFSRMILPAYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLKNIVRRKQSRSSSCSFSLFQGKNNEEVEDEALMMEIARLKEEQKSLEEELQGMNKRLETTEKRPQQMMAFLYKVVEDPNVLSRILLEKDQKQLGEKKRRLISSSSPSSSYGMAAVKTEFEEEEATLGSAIISSPLPETTTTGFEFGRYSQAPPTTEETIISGTDTSSGWWSERNDAIRVRPRTNQQAYNNWSSSPLTAVVAARMDEKASAMMSMSALEGERNSGREEQRSYFTEMPAENSPRPPYPFSLLEGGF 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0808 347 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele48g0808 347 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele48g0808 347 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele48g0808 347 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele48g0808 347 Coils Coil 115 156 - -
Lele48g0808 347 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Lele48g0808 347 MobiDBLite consensus disorder prediction 304 347 - -
Lele48g0808 347 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele48g0808 347 Gene3D - 2 100 IPR036388 -
Lele48g0808 347 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele48g0808 347 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 214 IPR027725 -
Lele48g0808 347 FunFam Heat stress transcription factor B-4 2 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0808 Lele-ChrLele48 13386938 13388114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0808 6 201 HSF AT3G24520 63.500 6.61e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele48g0808 HSF_DNA-bind 7.8e-30 CL0123