Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0798 ATGTCAGCGACGCCATCCCCCGGAGCTGCTCCAGCACCCACGTCGCCGCCTGCTCCGGCGACCAACAATACTTCTCCTCCGCCCAGCCCTTCTGCTCCTCCACCGTCCACCCCGGCCTCACCGCCGCCAGCTACACCCTCTGCTTCACCGCCGGCGACTCCTTCGGCTCCTCCTCCAGCCCCAGCTACACCTTCTCTGAGCCCTCCTTCTACTTCCCCTCCATCCCCGCCATCAACCTCAACACCACCGGAATCTTCAGCGTCGCCTCCTCCACCGTCCAGTACCAATACTCCGCCGAGTCCTCCGAGTCGCAGCTCGCCGACTCCTCCGTCGAGCTCAACTTCGCCTTCGACTCCAAATCGAAGTCCGCCGCCACCGTCGTCAAAATCATCGCCGTCTCCATCTTCGTCATCGTCCTCATCGAGTAATATATCGACTGGGGTTGTTGTCGCCATTGCCGTTGGGGCTGTGGCGGTTCTTCTTGTGCTGAGTATTCTCTGCATTTGCTGTAGGAAGAAAAAGAGAAGACGTGATGAGGAATACTATGTGCCGCCTCCCTTACCGCCTCAGGGCCCCAAAGTTGATCCATATGGTGGCCCACAGCGTCAATGGCAACACAATGCTCCCCCTCCTTCAGATCATGTAGTATCTGTAATGCCAAAGCCATCGCCCCCACCGCCACCAGTTGCATCAAGGCCTGCCCACTTACCTGTTTATGGTCCTCAACCTCCACCGCCACCACCACCTTTCATAAGCAGCAGTGGTGGGTCTGGCTCTAACTATTCAGGCGGTGAAACCATTCTTCCCCCGCCATCTCCAGGCTTTGCACTGGGTTTCTCAAAGAGTACATTTACATATGAGGAGCTGGCCCGGGCAACGGATGGCTTCTCAGATGCCAACCTCCTTGGACAAGGTGGATTTGGTTATGTGCACAGAGGCATTCTTCCGAATGGAAAGGAAGTGGCTGTGAAGCAGCTTAAGGCTGGAAGTGGGCAGGGGGAGCGTGAGTTTCAAGCTGAAGTTGAGATCATTAGTCGGGTTCATCACAAACATCTTGTTTCTTTGGTTGGATACTGCATTACTGGGACACAGAGGTTGCTTGTTTATGAATTTGTTCCCAACAATACATTGGAGTTTCACTTGCATGGAAAAGGAAGGCCTACCATGGACTGGCCCACAAGACTAAAAATTGCTTTAGGATCAGCAAAAGGATTAGCGTATCTTCACGAGGACTGTCATCCTAAGATCATCCACCGTGATATCAAAGCCGCTAACATACTCCTGGATTTTAAGTTTGAAGCAAAGGTGGCAGATTTTGGACTTGCAAAGTTTACATCTGATGTTAATACTCATGTTTCCACTCGGGTGATGGGGACATTTGGTTACCTGGCTCCAGAATATGCTTCTAGTGGGAAACTCACTGACAAATCAGATGTTTTCTCCTTTGGAGTCATGCTTCTGGAATTAATTACCGGACGCCGACCAGTTGATTCAAATCATACGTTTATGGAGGATAGTTTGGTAGACTGGGCAAGGCCTACGCTCACTCGTGCATTGGAAGATGAAAATTTTGATTCAGTGGTTGATCCAAGACTCCAACATGAATATGACCCCAATGAGATGGCTCGTATGGTGGCTTGCGCTGCAGCTTGCATACGGCATTCAGCAAAACGCAGGCCAAGGATGAGCCAGGTTGTTCGTGCTCTAGAAGGAGATGTGTCTCTAGCAGACCTTAATGAAGGAATTAAGCCCGGCCATAGCTCTGTCTACAGTTCTAATGGAAGTTCAGATTATGACACAGTTCAATACAGGGAGGATATGAAAAAGTTCAGAAAAATGGCATTTGGAGGAGGAACGAATGAGTATGGTGCCAGTAGCGAATACAGCGGACCACCAACGAGTGAGTATGGCTTGTACCCTTCGGGATCAAGCAGTGAAGGCCAGAGTCGCCAGACCACAAGGGAAATGGAAATGAGAAAGATGAAGAACAGCCAAGGTTTCAGTGGAAGTTCATAA 2016 0.5089 MSATPSPGAAPAPTSPPAPATNNTSPPPSPSAPPPSTPASPPPATPSASPPATPSAPPPAPATPSLSPPSTSPPSPPSTSTPPESSASPPPPSSTNTPPSPPSRSSPTPPSSSTSPSTPNRSPPPPSSKSSPSPSSSSSSSSNISTGVVVAIAVGAVAVLLVLSILCICCRKKKRRRDEEYYVPPPLPPQGPKVDPYGGPQRQWQHNAPPPSDHVVSVMPKPSPPPPPVASRPAHLPVYGPQPPPPPPPFISSSGGSGSNYSGGETILPPPSPGFALGFSKSTFTYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGTQRLLVYEFVPNNTLEFHLHGKGRPTMDWPTRLKIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKFTSDVNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSFGVMLLELITGRRPVDSNHTFMEDSLVDWARPTLTRALEDENFDSVVDPRLQHEYDPNEMARMVACAAACIRHSAKRRPRMSQVVRALEGDVSLADLNEGIKPGHSSVYSSNGSSDYDTVQYREDMKKFRKMAFGGGTNEYGASSEYSGPPTSEYGLYPSGSSSEGQSRQTTREMEMRKMKNSQGFSGSS 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0798 671 PRINTS Proline rich extensin signature 19 35 - -
Lele48g0798 671 PRINTS Proline rich extensin signature 38 55 - -
Lele48g0798 671 PRINTS Proline rich extensin signature 57 82 - -
Lele48g0798 671 PRINTS Proline rich extensin signature 1 19 - -
Lele48g0798 671 MobiDBLite consensus disorder prediction 215 252 - -
Lele48g0798 671 SMART serkin_6 296 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele48g0798 671 Gene3D Phosphorylase Kinase; domain 1 276 371 - -
Lele48g0798 671 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524
Lele48g0798 671 Gene3D Transferase(Phosphotransferase) domain 1 372 580 - -
Lele48g0798 671 MobiDBLite consensus disorder prediction 1 143 - -
Lele48g0798 671 MobiDBLite consensus disorder prediction 622 651 - -
Lele48g0798 671 MobiDBLite consensus disorder prediction 181 265 - -
Lele48g0798 671 MobiDBLite consensus disorder prediction 622 671 - -
Lele48g0798 671 ProSiteProfiles Protein kinase domain profile. 296 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele48g0798 671 Pfam Protein tyrosine and serine/threonine kinase 301 569 IPR001245 GO:0004672|GO:0006468
Lele48g0798 671 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 155 636 - -
Lele48g0798 671 SUPERFAMILY Protein kinase-like (PK-like) 276 569 IPR011009 -
Lele48g0798 671 CDD STKc_IRAK 302 571 - -
Lele48g0798 671 MobiDBLite consensus disorder prediction 9 131 - -
Lele48g0798 671 FunFam Proline-rich receptor-like protein kinase PERK1 372 580 - -
Lele48g0798 671 FunFam proline-rich receptor-like protein kinase PERK1 274 371 - -
Lele48g0798 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0798 Lele-ChrLele48 13292686 13296021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0798 85 654 Trihelix Transcription Factor Family AT1G70460 48.596 5.75e-170 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lele48g0798 PK_Tyr_Ser-Thr 1.5e-47 CL0016