Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0777 ATGCCTCCTATTTCTCAGCATCATCAACAACAACCACCTAATTCTAATTCTTCTTCTCCTTTCTTCTTCTCATCATCATCCACTAACTTCCTCTCTCCTAATTATCCCCCATCTTCTTCCCTTCCTCTTCCTTTTCCTTCTACTTGGCATGGAATTCCAGATCACCTTCCTCAGTCCTGGAGCCACCTTCTCTTGGGTGAAGAAGATAAGAAAATGGGGAACTGGGAGGAGCAAGTGCTGATGAGTCAGGCTCAAAATGTTGGTCTTGTGGATGTCAAGCAAGAAAGCTCATCCGTAAACAGTTATGTATATGGCGGTGGTGGTGCTGGTGGCGGCAAAAACAGTAACGACGAGTTTAAGGTGGCTTCCGCAGGTGGTGGGGGTGGTGCTGCTGCTAATTGGTCTCATCATCAAATAGTGCCTCCTCCTCCTGCTGCTGCTGCTTCATCTTCTTCGCCAAAATCATGTGTCACAAGTTTCAGCAGTAACATGTTGGATTTCTCTAACACTAAGACAGATGCTAGGCATCCTCCTCCTGATCGATCTTCTGAGTGTAACAGCAATGGAGGTGGTGGCGGTGGGGCAGTGAAGAAAGCTAGGGTTCAACCATCAACGACGACACAGACACAGTCAAGCTTCAAGGTTAGAAAGGAGAAATTAGGTGACAGAATTACTGCCCTTCATCAGATTGTTTCCCCCTTTGGAAAGACTGATACAGCGTCTGTCTTGTTAGAAGCTATAGGATACATCAGATTCCTCCAGAGTCAAATTGAGGCCCTTTCCTCACCATACTTGGGCACTATTTCTGCATCATCTTCTTCAAACATGAGGCACCAACACTCTGTTCAAGGAGAGAAGAATTGTATATTCCCTGAAGACTCTGGTCAGGAAATAGAGGAAGAACCAAAGAAGGATCTGAAGAGTAGAGGGTTGTGTTTGGTTCCAGTTTCTTGCACACTTCAAATTGGCAGGGATAATGGAGCTGATTACTGGGCTCCTGCTCTTGGAGGAGGAGGCTTTCGATGA 1026 0.461 MPPISQHHQQQPPNSNSSSPFFFSSSSTNFLSPNYPPSSSLPLPFPSTWHGIPDHLPQSWSHLLLGEEDKKMGNWEEQVLMSQAQNVGLVDVKQESSSVNSYVYGGGGAGGGKNSNDEFKVASAGGGGGAAANWSHHQIVPPPPAAAASSSSPKSCVTSFSSNMLDFSNTKTDARHPPPDRSSECNSNGGGGGGAVKKARVQPSTTTQTQSSFKVRKEKLGDRITALHQIVSPFGKTDTASVLLEAIGYIRFLQSQIEALSSPYLGTISASSSSNMRHQHSVQGEKNCIFPEDSGQEIEEEPKKDLKSRGLCLVPVSCTLQIGRDNGADYWAPALGGGGFR 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0777 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 214 264 IPR036638 GO:0046983
Lele48g0777 341 MobiDBLite consensus disorder prediction 167 214 - -
Lele48g0777 341 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 24 321 - -
Lele48g0777 341 MobiDBLite consensus disorder prediction 127 153 - -
Lele48g0777 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 204 253 IPR011598 GO:0046983
Lele48g0777 341 MobiDBLite consensus disorder prediction 1 22 - -
Lele48g0777 341 CDD bHLH_AtbHLH_like 212 261 IPR045239 -
Lele48g0777 341 Gene3D - 212 267 IPR036638 GO:0046983
Lele48g0777 341 MobiDBLite consensus disorder prediction 200 214 - -
Lele48g0777 341 FunFam Transcription factor bHLH123 family 214 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0777 Lele-ChrLele48 13134665 13138399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0777 71 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 47.034 6.10e-54 179
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g0655 45 5491298 5495405 Lele48g0777 48 13134665 13138399 hybridization
Lele46g0708 46 5250981 5254744 Lele48g0777 48 13134665 13138399 hybridization