Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0775 ATGTCTGTGGCTCAGCAAGACTATGTAAGCTTATCAGAGACTCCAACTCCATCAATGGAAAGCTCAGACAAGTTTTCTCAGAGAAGAAACGGTTTGAATCTCAAGGCAACTGAACTACGGCTCGGGTTACCCGGGTCGGAGTCGCCCGAGAGGGATTCGGATTCGGAGGATAAGAATGAGTATCCGTTAGGCATACTGAAGAGTCTCATGTCTGGGGCCAAGAGGGGCTTCTCAGACGCCATTGATGGCGGTTCTGGGAAGTGGGTTCTCTCTGGCAAAGCTGGTTCTGATATGGGTTTGGGTAAAGATTGTGGCTTGTTCTCTCCCAGAGGTTCTAACTCCTGCAAGACCCCTGTCGGGTCGGATTCCGGCAACAATCAAGCGGGTTTGGGTCCCTCCGTTGTGAAAGATAGTATTCCTCAGCCAACAAAGCCTTTGCATGAGAAAAAGCCTCAGTTTCCTGCTCTTTCTTCAAAGGCACAAGTTGTGGGATGGCCACCAATCCGATCATTTCGGAAGAACTCGATGGCTTCTCAGCCTCAGAAGAATGGTGAAGATGCAGAATCAGGTGGTAAGAGCGGATGTCTTTATGTGAAAGTGAGCATGGATGGTGCTCCATACTTGAGGAAGGTAGATCTCAACAACTTTGCCTCTTACAAGCAACTTTCTTCCGCACTGGAAAAGATGTTCAGTGGCTTTACAATGAGTCAATGCGGCTCTCATGGAGTTTCGTGTCGGGATAATATGAGTGAGAGTAGATTGATGGATCTGCTTAATGGCTCAGAATATGTGCTCACTTATGAAGACAAGGATGGTGATTGGATGCTAGTCGGTGATGTTCCTTGGGAGATGTTCACTGATTCTTGCAAGAGGATGAGGATAATGAAGAGTTCTGAAGCCATTGGGTTAGCGCCGAGAGCGATGGAGAAGTGCAAAAGTCAGAACTAG 948 0.4778 MSVAQQDYVSLSETPTPSMESSDKFSQRRNGLNLKATELRLGLPGSESPERDSDSEDKNEYPLGILKSLMSGAKRGFSDAIDGGSGKWVLSGKAGSDMGLGKDCGLFSPRGSNSCKTPVGSDSGNNQAGLGPSVVKDSIPQPTKPLHEKKPQFPALSSKAQVVGWPPIRSFRKNSMASQPQKNGEDAESGGKSGCLYVKVSMDGAPYLRKVDLNNFASYKQLSSALEKMFSGFTMSQCGSHGVSCRDNMSESRLMDLLNGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRMRIMKSSEAIGLAPRAMEKCKSQN 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0775 315 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 32 302 IPR003311 GO:0005634|GO:0006355
Lele48g0775 315 MobiDBLite consensus disorder prediction 1 62 - -
Lele48g0775 315 MobiDBLite consensus disorder prediction 1 33 - -
Lele48g0775 315 SUPERFAMILY CAD & PB1 domains 191 296 - -
Lele48g0775 315 Pfam AUX/IAA family 37 306 IPR033389 -
Lele48g0775 315 MobiDBLite consensus disorder prediction 172 186 - -
Lele48g0775 315 Gene3D - 190 309 - -
Lele48g0775 315 MobiDBLite consensus disorder prediction 172 191 - -
Lele48g0775 315 MobiDBLite consensus disorder prediction 45 61 - -
Lele48g0775 315 MobiDBLite consensus disorder prediction 114 132 - -
Lele48g0775 315 MobiDBLite consensus disorder prediction 114 160 - -
Lele48g0775 315 ProSiteProfiles PB1 domain profile. 195 297 IPR000270 GO:0005515
Lele48g0775 315 FunFam Auxin-responsive protein 190 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0775 Lele-ChrLele48 13095252 13098114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0775 199 305 B3 DNA Binding Superfamily AT4G23980 31.776 2.04e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele48g0775 AUX_IAA 3.8e-87 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g0658 45 5549691 5552676 Lele48g0775 48 13095252 13098114 hybridization
Lele46g0710 46 5296663 5299505 Lele48g0775 48 13095252 13098114 hybridization