Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0748 ATGCCACATCACTTTTACTCCATTTTCTTCTTCTTTATTGTTCTGAGTGATGCTCAGATTCAGTCTCATCTGTATGATAAAGAACATGCCATCCTACTCAACGTAAAACAACACTTTCATCCATTCCTCAATCAGTGGGTCCCGTTGAATTCCTCTCATTGTTCTTGGCCTGGGATTAGCTGCACCGATAACTCTGTCACCGATCTAGATTTTTCTGACTTTAACATCACCGTAACGATACCTCCTTTCATCTGTGACCTCAAAAATCTCACCTCTATTGATTTTCAGTTTAATTACTTTTCTGGGGAGTTCCCGAAATTTCTCTATAACTGCTCCAAGCTTGAGCATCTCGATCTCTCTCAGAACAGTTTTGTGGGTCCGATTCCAAACGACATCGATCGATTGGCCAACCTGCGTTTTCTTAGCCTGGGTGCCAACTATTTCTCCGGCGAAATTCCGGCGAGCATAGGAAGGTTGAAGGAGCTGAGAAATCTTCAACTTTACTTGTGTAAATTTAACTTCAGTGTCCCAGATGAAATAAGCGACTTGTCCAATCTTGAATTCTTACACCTGGGTAAAAACAACGATCTGCCTCCTACCCAGTTCCCGTTGAGCTTCACCAAGTTGAAAAAAGTGAAAACCCTTTGGATGTTCTCCATGAATTTGATCGGGAAAATTCCAGAAAGTATTGAAGAAATGGAGAGTTTGGAGGAATTGGATTTATGCCAGAATGGCTTAAGTGGGCAAATCCCCAGAGGTTTGTTTACTCTGAAGAATTTAAGCAAATTGCAGCTTTGGAAAAACAAGCTATCTGGGGAATTACCGACAGAAATCGAAGCTTTGAATCTGATTGTGCTCGATGTTTCAAGGAATGATCTTACTGGGAAAATCCCAGATGGTTTTGGGAAGCTGAAAAACCTAAGAGGTTTGAGACTGGATATGAATCAACTATCAGGAGAGATACCTGAAAACCTTGCTCATCTACCAGCTCTTGTAGATTTCATGGTTTTTCAAAACAATCTCTCTGGTTCTCTTCCTCCTTACTTCGGTCGTTATTCGCCACTCGAAACCTTTCAGATTGCTTCCAATAGACTGACGGGAGAATTGCCAGAGGATTTATGTTACAATGGCAGGTTAGTTGGAGTAAGTGCTTTTGACAACAATCTAACTGGTGAGCTATCAGAATCGCTAGGGAGCTGCAATAGCCTGCAACACTTTCTTCTTCAAAATAATAGTTTTTTTGGCGAAATCCCCGGAGGCCTTTGGACGCTATATAATTTGACGAGTTTAACGATCAACGACAACAAGTTCACCGGCGAGCTACCTCAAAGATTCGCTTGGAATCTTTCACGTTTGTCCATAAGCAACAATGAATTCTCTGGTCGAATTCCACAAGGAGTATCTACATTGAAGAATCTGTTTGTGTTTGAAGCTAGTAAGAATCTCTTCAATGGAAGTATTCCACTGGAGCTAACGAATCTTCCTAAGCTAACAAAGTTGTTGCTTGATCAAAACCAGCTTACAGGGCCACTTCCATCAGAATTCATATCTTGGAGTTCTCTCTATGCTCTAGATTTGAGCCACAATCAACTCTCTGGACAAATCCCGGATTCGATCGATAGTTTACGGGTACTTTCAGAACTAGACTTGTCAAATAATCAGCTATCAGGTCATGTTCCTCCTCAACTTGGTACATTGTCAATGACACTCACAAACCTTAATCTCTCCTCAAATCTTTTCACCGGGAAGATTCCTAGTGAATTCGAAAACCTTGCTTATTCCGACAGCTTTCTAAACAATTCCGGTATCTGTGCTAATACCAAAAAGCTAAACCTTCCCTTATGCAATTCCGGTTCTGAGCTTCAAAGGTTACACAAGAGATCATCTGTGACTCTCGCTTTGATCATATGCCTAGTGGTAGTGGCATCTTTAGCAGTTTTCGGGGTTTTACTTTTGATTTTCAGAGTATACAAATCGAGAAAGCGAGAATTGGATACTTCGTGGAAGTTGACTTACTTTCAGAGCCTAAGTTTCTCGGGGATGAACATCGTGTCATCGTTGACGGATCATAATATTATAGGCCAAGGTGGGTATGGTACGGTATACCAAGTTGCTGTCGTTGATTTTGGCTATGTCGCCGTGAAGAAGATATTGAGTAACAAGAAGTGGGAGCAGAAACTTGAGGATGCATTCCTAGCAGAAGTTAAGATTTTGAGCAACATTCGACACAAAAATATTGTGAAGCTCTTGTGTTGTATGTCAAACGAGGATTCTTTGCTGCTCGTGTATGAATATCTAGAAAACAATAGCCTCGATCGCTGGTTGAACAAGAAGAATAGGATAAACCATAATTTCGTTCTTGATTGGCAGAAAAGATTGGGGATAGCCATTGGAGCTGCACAAGGCCTTACCTATATGCACCATGATTGCTTTCCTCCTGTTGTTCATCGTGATATCAAAACAAGTAACATCCTTATGGATTCTGAGTTCAATGCGAAAGTCGCAGACTTCGGTCTAGCAAGATTATTAATCAAGCCGAGCGAACTCACCATGTCGGCTGTAGCTGGATCATTTGGCTATATCGCACCAGAATACATTCAAACGACAAAAATCAATGAAAAGATCGATGTGTATAGCTTTGGGGTGGTGTTGCTGGAACTAACAACCGGAAAAGAAGCAAATCGTGGGGATGAACACTCATCTCTCGCGGAATGGGCATGGCGTCACGTGCAGTTGGGTGGTGATGTGGAAGAAGTTCTAGACGAAGAAATTAAGGAAGCATGCTATATGGATGAAATATGCCGCGTGTTCAAACTTGGGGTGATGTGTACTGCAATACTACCGGCTAGTAGGCCTTCCATGAAGGAGGTTCTGCAGATACTGCTTCGTTGCCGGGACATGTATGGTGACAGAGAAAGGAGTCCTGGAATCTTTGATGTTTTTCCTCTGCTGAAAAATTCAAAGAGGGAAAGTAGATTGGATAGTGATGATGATTTATAG 3000 0.417 MPHHFYSIFFFFIVLSDAQIQSHLYDKEHAILLNVKQHFHPFLNQWVPLNSSHCSWPGISCTDNSVTDLDFSDFNITVTIPPFICDLKNLTSIDFQFNYFSGEFPKFLYNCSKLEHLDLSQNSFVGPIPNDIDRLANLRFLSLGANYFSGEIPASIGRLKELRNLQLYLCKFNFSVPDEISDLSNLEFLHLGKNNDLPPTQFPLSFTKLKKVKTLWMFSMNLIGKIPESIEEMESLEELDLCQNGLSGQIPRGLFTLKNLSKLQLWKNKLSGELPTEIEALNLIVLDVSRNDLTGKIPDGFGKLKNLRGLRLDMNQLSGEIPENLAHLPALVDFMVFQNNLSGSLPPYFGRYSPLETFQIASNRLTGELPEDLCYNGRLVGVSAFDNNLTGELSESLGSCNSLQHFLLQNNSFFGEIPGGLWTLYNLTSLTINDNKFTGELPQRFAWNLSRLSISNNEFSGRIPQGVSTLKNLFVFEASKNLFNGSIPLELTNLPKLTKLLLDQNQLTGPLPSEFISWSSLYALDLSHNQLSGQIPDSIDSLRVLSELDLSNNQLSGHVPPQLGTLSMTLTNLNLSSNLFTGKIPSEFENLAYSDSFLNNSGICANTKKLNLPLCNSGSELQRLHKRSSVTLALIICLVVVASLAVFGVLLLIFRVYKSRKRELDTSWKLTYFQSLSFSGMNIVSSLTDHNIIGQGGYGTVYQVAVVDFGYVAVKKILSNKKWEQKLEDAFLAEVKILSNIRHKNIVKLLCCMSNEDSLLLVYEYLENNSLDRWLNKKNRINHNFVLDWQKRLGIAIGAAQGLTYMHHDCFPPVVHRDIKTSNILMDSEFNAKVADFGLARLLIKPSELTMSAVAGSFGYIAPEYIQTTKINEKIDVYSFGVVLLELTTGKEANRGDEHSSLAEWAWRHVQLGGDVEEVLDEEIKEACYMDEICRVFKLGVMCTAILPASRPSMKEVLQILLRCRDMYGDRERSPGIFDVFPLLKNSKRESRLDSDDDL 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0748 999 CDD STKc_IRAK 693 963 - -
Lele48g0748 999 SMART LRR_typ_2 233 257 IPR003591 -
Lele48g0748 999 SMART LRR_typ_2 542 566 IPR003591 -
Lele48g0748 999 SMART LRR_typ_2 424 447 IPR003591 -
Lele48g0748 999 SMART LRR_typ_2 135 159 IPR003591 -
Lele48g0748 999 SMART LRR_typ_2 183 204 IPR003591 -
Lele48g0748 999 SMART LRR_typ_2 304 328 IPR003591 -
Lele48g0748 999 SMART LRR_typ_2 494 517 IPR003591 -
Lele48g0748 999 Gene3D Transferase(Phosphotransferase) domain 1 766 974 - -
Lele48g0748 999 FunFam Kinase family with leucine-rich repeat domain-containing protein 766 975 - -
Lele48g0748 999 Pfam Leucine rich repeat N-terminal domain 30 61 IPR013210 -
Lele48g0748 999 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 193 274 - -
Lele48g0748 999 PRINTS Leucine-rich repeat signature 521 534 - -
Lele48g0748 999 PRINTS Leucine-rich repeat signature 542 555 - -
Lele48g0748 999 ProSitePatterns Protein kinases ATP-binding region signature. 693 716 IPR017441 GO:0005524
Lele48g0748 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672|GO:0006468
Lele48g0748 999 SUPERFAMILY RNI-like 286 619 - -
Lele48g0748 999 Gene3D Ribonuclease Inhibitor 334 616 IPR032675 -
Lele48g0748 999 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 202 956 - -
Lele48g0748 999 SUPERFAMILY Protein kinase-like (PK-like) 672 961 IPR011009 -
Lele48g0748 999 Pfam Leucine Rich Repeat 570 591 IPR001611 GO:0005515
Lele48g0748 999 Pfam Leucine Rich Repeat 282 304 IPR001611 GO:0005515
Lele48g0748 999 Pfam Leucine rich repeat 89 147 IPR001611 GO:0005515
Lele48g0748 999 Pfam Leucine rich repeat 495 555 IPR001611 GO:0005515
Lele48g0748 999 ProSiteProfiles Protein kinase domain profile. 687 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele48g0748 999 SMART serkin_6 687 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele48g0748 999 FunFam Leucine-rich repeat receptor-like protein kinase TDR 301 617 - -
Lele48g0748 999 Gene3D Ribonuclease Inhibitor 200 333 IPR032675 -
Lele48g0748 999 Gene3D Ribonuclease Inhibitor 27 134 IPR032675 -
Lele48g0748 999 Gene3D Ribonuclease Inhibitor 135 199 IPR032675 -
Lele48g0748 999 Pfam Protein kinase domain 689 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele48g0748 999 FunFam Receptor-like protein kinase HSL1 isoform A 25 174 - -
Lele48g0748 999 Gene3D Phosphorylase Kinase; domain 1 671 765 - -
Lele48g0748 999 SUPERFAMILY L domain-like 33 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0748 Lele-ChrLele48 12797542 12800626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0748 28 999 Receptor kinase-like Gene Family AT5G25930 50.607 0.0 930
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lele48g0748 Pkinase 2.6e-50 CL0016