Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0746 ATGTTGATTTCTCATTGTATTTGCTTTCTTCTTCTTCTTCTGCAAAATCCTTCTGCAACGTTGTGCCACACCAAGGGACTTAGACCCGGCAGGCATACTTATTCGGAGCAGCAATTCACGAGATGGGTTAACTTTGTTGGAAGTCTCAAGCATTCTGTGTTTAAGACTGCAAAAAACAAGCTTTTTGCTTCTTACACTCTTCACGTTTCTAAGAATCCTGCCGTAGCAGATTTTGCAACTATTCAAGAAGCCATTGATTCTCTTCCTTCCATTAATCTCGTGAGAGTGGTTCTTAAGGTTCATGCAGTTAACATTCCTCCTATGAAATCGTTCATAACCATAGAAGGAGCAGGAGCAGATAACACCATAGTTCAATGGGGTGACACAGCTCAAACACCAGGTCCCAGAGGACAGCCATTAGGAACATACGATTCCGCTACATTTGCAGTGAACTCACCTTATTTCATCGCCAAGAACATAACATTCAAAAACACAACACCAGTTCCAGCACCAGGAGCAGTAGGGAAACAAGCAGTGGCATTAAGAATATCAGCAGACACGGCATCATTCTACGGATGCAAATTCCTAGGAGCACAAGACACATTGTATGACCATGTAGGAAGACATTATTATAAGGATTGTTACATTGAAGGCTCTGTGGATTTCATATTCGGGAACGCGCTGTCTCTGTTCGAGGGGTGTCACGTGCATGCAATAGCAGAGAGGTTTGGGGCTTTAACAGCACAAGGAAGGAGCAGCATAATGGAGGACACAGGGTTCTCATTTGTGAACTGCAAGGTCACGGGATCAGGAGTAATATACCTTGGAAGGGCTTGGGGTCCATTTTCTCGTGTGGTTTTTGCTTACACTTACATGGACGACATCATCATTCCCAAGGGCTGGTCTAACTGGGGCGACCCTAACCGTGAAATGTTATGCCAGTATGGGCTTTCTATGCCTTCAAGCATTATGACAGTATTTTATGGACAGTACAAGTGTACAGGACCAGGAGCTAGCTTTGCTGGAAGAGTATCATGGTGTAAAGAACTCAGCGATGAGGAAGCTAAGCCTTTTATTTCCCTTGGCTTCATTGATGGTGATGAGTGGATCAGATTGTAG 1119 0.4406 MLISHCICFLLLLLQNPSATLCHTKGLRPGRHTYSEQQFTRWVNFVGSLKHSVFKTAKNKLFASYTLHVSKNPAVADFATIQEAIDSLPSINLVRVVLKVHAVNIPPMKSFITIEGAGADNTIVQWGDTAQTPGPRGQPLGTYDSATFAVNSPYFIAKNITFKNTTPVPAPGAVGKQAVALRISADTASFYGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAERFGALTAQGRSSIMEDTGFSFVNCKVTGSGVIYLGRAWGPFSRVVFAYTYMDDIIIPKGWSNWGDPNREMLCQYGLSMPSSIMTVFYGQYKCTGPGASFAGRVSWCKELSDEEAKPFISLGFIDGDEWIRL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0746 372 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
Lele48g0746 372 SUPERFAMILY Pectin lyase-like 63 371 IPR011050 -
Lele48g0746 372 FunFam Pectinesterase 63 372 - -
Lele48g0746 372 Gene3D - 63 372 IPR012334 -
Lele48g0746 372 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 59 371 - -
Lele48g0746 372 Pfam Pectinesterase 76 367 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0746 Lele-ChrLele48 12782283 12786255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0746 5 370 Carbohydrate Esterase AT5G47500 40.860 4.23e-96 289