Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0678 ATGTTTTCTGACCATCTTGCTTCCAGTGGAATTCTTGGCTGCTCTCTTTGTAAAGATGTGCTGTCTAAGTTTCCCCCAGATACTGTTAAGATGAAGAAAACCATCTTTTTGCTACCTTGGGACTCCACTTCAGAAACTGTCAAGAAACTTTTTAAGGTATTACATTTTCTTTATACATATGCTACTGTTGTTAATATTTGCCCCTTCACTCATGATGAGCTTGCTCAAGCTTTTCATGATAAGTTTTAA 249 0.3655 MFSDHLASSGILGCSLCKDVLSKFPPDTVKMKKTIFLLPWDSTSETVKKLFKVLHFLYTYATVVNICPFTHDELAQAFHDKF 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0678 82 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 5 81 IPR044977 GO:0006357
Lele48g0678 82 Pfam DDT domain 45 81 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0678 Lele-ChrLele48 8603543 8604816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0678 18 80 Homeobox Transcription Factor Family AT5G44180 47.619 1.40e-15 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lele48g0678 DDT 0.00012 No_clan