Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0603 ATGGCTTCTATGTTACCATACGGCGACGTTGATTTTAGCTTGAGGGCAATTGCCGGTTGCGCTGAGGGATTTGGCGGCAACGCCATTGGTGGCCTCCACGGCGCCCTCTATTTCGTCACCACCCTCGCTGATGATGGTCCTGGCTCGCTACGGGAAGGATGTCGTAGAAAGGAGCCACTCTGGATTGTTTTTGAAGTCTCGGGTACAATTAATCTTTCATCATACTTGAGTGTATCATCTTACAAGACAATAGATGGCCGAGGCCAGAGCATAAAGCTCACAGGAAAGGGCTTAAGGCTGAAAGAATGTGAGAATATAATTGTATGCAACCTTAAGTTTGAAGCTGGTAGGGGTCATGATGTTGATGGCATTCAAATAAAACCAAACTCTAGGAACATATGGATTGACCGCTGCAGTCTTCGTGATTATGATGACGGGCTAATAGACATTACAAGACAAAGCACAGATATTACTGTATCTAGATGTTACTTTGCACAGCATGATAAGACAATGCTAATTGGAGCTGACCCAACTCATGTCGGCGATAGATGCATCCGGGTGACAATTCATCACTGCTTCTTTGATGGGACACGACAAAGACAACCTCGCGTTAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGCTATATATGCTGTTTGTGCTAGTGTTGAGTCCCAGATATACTCTCAGTGCAACATTTATGAAGCAGACACTAAGAAAAAGACTTTTGAATTCTATACGGAGAAGGCTGCTGATAAGGAGGAGCAGAAATCTGGCACCATAATATCTGAAGGAGACATATTTCTTAATGGTGCACAACCATGCTTACAAACACAACACACAGAAGGATGCATGTTTCACCCTTCTGAATTTTATCCAACTTGGACTATGGAAGCACCCTCAGATTCTTTTAAAGATGTTCTGCAAATATGTGCAGGTTGGCAATCTATTCCTCGGCCGGCGGAATTCTCACCTTGTCTGAATTAG 1002 0.4361 MASMLPYGDVDFSLRAIAGCAEGFGGNAIGGLHGALYFVTTLADDGPGSLREGCRRKEPLWIVFEVSGTINLSSYLSVSSYKTIDGRGQSIKLTGKGLRLKECENIIVCNLKFEAGRGHDVDGIQIKPNSRNIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWAIYAVCASVESQIYSQCNIYEADTKKKTFEFYTEKAADKEEQKSGTIISEGDIFLNGAQPCLQTQHTEGCMFHPSEFYPTWTMEAPSDSFKDVLQICAGWQSIPRPAEFSPCLN 333
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0603 333 PRINTS Pollen allergen Amb family signature 20 37 IPR018082 -
Lele48g0603 333 PRINTS Pollen allergen Amb family signature 222 241 IPR018082 -
Lele48g0603 333 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
Lele48g0603 333 Gene3D - 8 318 IPR012334 -
Lele48g0603 333 SUPERFAMILY Pectin lyase-like 18 322 IPR011050 -
Lele48g0603 333 SMART amb_all 67 245 IPR002022 -
Lele48g0603 333 Pfam Pectate lyase 76 238 IPR002022 -
Lele48g0603 333 PANTHER PECTATE LYASE 18-RELATED 15 284 IPR045032 GO:0030570
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele48g0603 Lele-ChrLele48 6014020 6017406 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0603 42 327 Polysaccharide Lyase AT3G55140 81.119 0.0 506