Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0588 ATGGTACAAAGAATTGGGACTCGACTCTTTAATCGCTCAGAAGCCCTAATCTTTGAGTTGTCTTATTTTCTAGGATTATCATTCTTCACAACAGAGAGCTACCTCATAAATCTGTTTTCTCCATTCGGAAGAATTAGAGAAGCTAGTCTAGTGAAGGACCCAAAAACTCAAAGGCCTAAAGGTTTTGGGTTTGTCTCCTATGAGTCAGAAATTGAAGCAGAGAAAGCTATGAACACCATGAATGGCAGGATAATTGATGGAAGGCTGATTTTCGTAGAACCTGCAAAAGCTACAATTCCTAAAGAAGATGGTGCTTCCTAA 321 0.3925 MVQRIGTRLFNRSEALIFELSYFLGLSFFTTESYLINLFSPFGRIREASLVKDPKTQRPKGFGFVSYESEIEAEKAMNTMNGRIIDGRLIFVEPAKATIPKEDGAS 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0588 106 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 90 IPR000504 GO:0003723
Lele48g0588 106 SUPERFAMILY RNA-binding domain, RBD 25 98 IPR035979 GO:0003676
Lele48g0588 106 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 97 IPR000504 GO:0003723
Lele48g0588 106 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 25 97 - -
Lele48g0588 106 Gene3D - 22 104 IPR012677 -
Lele48g0588 106 SMART rrm1_1 21 93 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0588 Lele-ChrLele48 5769542 5770907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0588 26 95 Eukaryotic Initiation Factors Gene Family AT3G11400 40.000 4.72e-09 50.4