Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele48g0579 | ATGGATCATCATCGGGTTCTCGATCATAGCATCGCCATGGCCAACTGTTTGATGTTGCTTTCTCGTGGAGCAGGCCACCAATTCGAGTGCAAGACTTGTAACCGGCAATTCCCATCGTTTCAAGCTCTGGGTGGCCACCGGGCGAGCCATAAGAAGCCGAGGCTGGCCATCGCCGGACTCGACGGTGAGATGCATGTGCTTCATGACGTCGCCGCCAAGCCTAAGACTCATGAGTGTTCCATTTGTGGTGTTGAGTTTGCAATAGGGCAAGCTTTGGGTGGTCATATGAGAAGGCACAGATCAGCTGCAACTACTTTGAATAATAATGTTCAGAACAAAACGAAAAAAACGATGACGTTGAGTAGCAGTAGTGATGGTAGTAGTAGTTGTCTTGATTCTGATAATCAGGTTCGTAGTTCTGGAGAAAAGAAGAAGAAAATCTTACTTTTGGATCTCAACTTAACGCCTTTGGAGAATGATTTAGAGTTTTAA | 492 | 0.4593 | MDHHRVLDHSIAMANCLMLLSRGAGHQFECKTCNRQFPSFQALGGHRASHKKPRLAIAGLDGEMHVLHDVAAKPKTHECSICGVEFAIGQALGGHMRRHRSAATTLNNNVQNKTKKTMTLSSSSDGSSSCLDSDNQVRSSGEKKKKILLLDLNLTPLENDLEF | 163 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele48g0579 | 163 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 12 | 159 | - | - | |
| Lele48g0579 | 163 | SUPERFAMILY | beta-beta-alpha zinc fingers | 27 | 99 | IPR036236 | - | |
| Lele48g0579 | 163 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 28 | 55 | IPR013087 | - | |
| Lele48g0579 | 163 | Pfam | C2H2-type zinc finger | 77 | 101 | - | - | |
| Lele48g0579 | 163 | Pfam | C2H2-type zinc finger | 28 | 53 | - | - | |
| Lele48g0579 | 163 | MobiDBLite | consensus disorder prediction | 118 | 136 | - | - | |
| Lele48g0579 | 163 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 79 | 99 | IPR013087 | - | |
| Lele48g0579 | 163 | MobiDBLite | consensus disorder prediction | 118 | 137 | - | - | |
| Lele48g0579 | 163 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 30 | 50 | IPR013087 | - | |
| Lele48g0579 | 163 | SMART | c2h2final6 | 77 | 99 | IPR013087 | - | |
| Lele48g0579 | 163 | SMART | c2h2final6 | 28 | 50 | IPR013087 | - | |
| Lele48g0579 | 163 | Gene3D | Classic Zinc Finger | 25 | 99 | - | - | |
| Lele48g0579 | 163 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 77 | 104 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele48g0579 | Lele-ChrLele48 | 5656059 | 5656550 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele48g0579 | 10 | 163 | C2H2 Transcription Factor Family | AT2G37430 | 43.787 | 9.11e-36 | 120 |
Transcription factors information