Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0508 ATGAGCTGTAATGGTTGTCGCGTTCTCCGAAAAGGTTGCAGTGAGAATTGTAGCATCAGACCTTGCTTGCAGTGGATCAAATCCCCTGAATCGCAAGCTAACGCCACTGTATTTCTCGCTAAGTTCTACGGCCGTGCTGGTCTCTTAAACCTCATTAACGCTGGTCCTGAACACCTTCGTCCAGCTATTTTTCGGTCTTTGCTTTACGAAGCTTGCGGGCGGATACTTAACCCGATTTATGGGTCCGTGGGTCTGTTATGGTCAGGGGACTGGCAGCGTTGTCAGGTCGCCGTGGAGGCGGTGTTGAAGGGTAACCCGATCACTCCGATCAACGCGGAAGCTGCCGTGAGTGGGCAGGGTCCACCGCTGAAGCCTTACGACATACGTCATGTTTCCAAGGACAAGAACTCGACCGAGTCGAACGATGCCCAACGAGTGAAGTCTCGGTCACGGTTCAAGCCATCCGCCGGGAAGACCAAGAAGGCGAACAAGGGGACCGAGTTGAAGTCCGCTGAACCGGAAGAACCGCGCAGTGGATGCACCGTGTGTTGTGCAGCCGTTGATGAGGTGGCGAACCGGTCCGCGAGCCACGAATCGTCTCTGAGTCACCAGTCGCAGGAGGTGCCGGCGAAGGCGGCATCGGCCGCGGCGGAAGGTGATAGCAAAGAGAGCGAGAGCATGATGTCGGTGGAGACCGCCGAAACTTCTATTCTCTTCCGAGACGAACCGGAAGCAACACCCAAACAAAGCGGGGGAGCGGACGAAGCCGATGGGGCCGAATTGGGACTGGAGCTGACGCTGGGGTTCAAACCGGTGCCACGTGAGGCTCACGTGATGCCGGTCAAGAAAAGAAAGAGAGAGTTTCAATTTCAGGACTCAGGTGGTGACTCAGCTAATAAGAAAGTATCAAGCACGAAGCTGGGGCTGGAATGCTCGGCTTGA 942 0.5573 MSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLLNLINAGPEHLRPAIFRSLLYEACGRILNPIYGSVGLLWSGDWQRCQVAVEAVLKGNPITPINAEAAVSGQGPPLKPYDIRHVSKDKNSTESNDAQRVKSRSRFKPSAGKTKKANKGTELKSAEPEEPRSGCTVCCAAVDEVANRSASHESSLSHQSQEVPAKAASAAAEGDSKESESMMSVETAETSILFRDEPEATPKQSGGADEADGAELGLELTLGFKPVPREAHVMPVKKRKREFQFQDSGGDSANKKVSSTKLGLECSA 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0508 313 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Lele48g0508 313 MobiDBLite consensus disorder prediction 195 209 - -
Lele48g0508 313 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Lele48g0508 313 MobiDBLite consensus disorder prediction 292 313 - -
Lele48g0508 313 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 242 - -
Lele48g0508 313 MobiDBLite consensus disorder prediction 160 174 - -
Lele48g0508 313 MobiDBLite consensus disorder prediction 283 313 - -
Lele48g0508 313 PIRSF AS2 1 308 IPR017414 -
Lele48g0508 313 MobiDBLite consensus disorder prediction 127 149 - -
Lele48g0508 313 MobiDBLite consensus disorder prediction 113 179 - -
Lele48g0508 313 MobiDBLite consensus disorder prediction 195 228 - -
Lele48g0508 313 MobiDBLite consensus disorder prediction 238 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0508 Lele-ChrLele48 4867615 4868648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0508 1 285 AS2 family AT3G02550 57.544 2.01e-102 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lele48g0508 LOB 1.1e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele47g0488 47 3862704 3863737 Lele48g0508 48 4867615 4868648 ECH
Lele48g0508 48 4867615 4868648 Lele48g0508 48 4867615 4868648 ECH
Lele45g0906 45 19795937 19796943 Lele48g0508 48 4867615 4868648 hybridization
Lele46g0987 46 17693287 17694320 Lele48g0508 48 4867615 4868648 hybridization