Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0447 ATGGAGGAAGTTGGTTGTAAAGGGGCTTCTTCATGTGTGGTGGGTTTTGGAGAGAACAGTAACAATAGTGGTGGTGGGGGGTTGTGTGCATCATCTTCATCTCATCCAATGATGATGATGATGCCTTTTGTGACTAGTTGTCATAATGTTTCCAATCAAATTCCATTCAGTCCTAATCCTATGAATAATAATGCTCCTCCTCCCACACACACTACTAGTACCACTCCTCCTTTCCTTCTTCCTTTGCCTTCTTGCACTCATAATATTACTTCTACTTCCAATCATCATCCCCAAAACCTCGCCAACAACAACGGTTCTGGGTTAGTTTCCTTTTTCATGGACGCCGCTGCCGCCAACAACAACAACACTAGCGCTTCTTCTTCTTCTTCTGCTGCTGCTAAGGCGAAGATCATGGCTCATCCTCACTATCATCGTCTTTTGTCTGCCTACGTTAATTGTCAAAAGGTAGGAGCGCCGCCGGAAGCGGTGGAGAGGTTGGAGGTAGCATGTGCGTCTGCGTTGACAATGGCCGGCGGCGGGGGGTCGGGGTGTATCGGAGAAGATCCGGCACTGGATCAGTTTATGGAGGCATATTGTGAGATGTTGACTAAGTATGAGCAAGAACTCTCGAAACCCTTCAAGGAAGCTATGCACTTTCTTCATACCATCGAGTCTCAGTTCAAAGCTCTTGCTATTTCTTCTTCTTCAGACTTCGCTAGCGGTGAGGCGAGTGATCGGAATGGATCATCGGAAGAAGACATGGATGTGCTGAAGAATCTGATCGATCCGCTGGCAGACGACCAAGAACTGAAGGGCCAACTTCTTCGCAAATACAGCGGATGCCTTGGAAGTCTGAAGCAGGAATTCATGAAGAAGAGGAAGAAAGGGAAGCTTCCTAAAGAAGCAAGGCAACAACTTCTTGATTGGTGGAGCAGACACTATAAATGGCCTTACCCATCTGAGTCACAGAAGCTGGCACTGGCAGAATCAACAGGACTGGATCAGAAGCAAATAAACAACTGGTTCATAAATCAAAGGAAGCGACATTGGAAACCATCAGAGGATATGCAATTCATGGTGGTGGATCCTTCTCATCCTCATCACCAGTATTACATGGACACTGTTCTTGGCAATCCCTATCCAATGATCTAA 1152 0.4644 MEEVGCKGASSCVVGFGENSNNSGGGGLCASSSSHPMMMMMPFVTSCHNVSNQIPFSPNPMNNNAPPPTHTTSTTPPFLLPLPSCTHNITSTSNHHPQNLANNNGSGLVSFFMDAAAANNNNTSASSSSSAAAKAKIMAHPHYHRLLSAYVNCQKVGAPPEAVERLEVACASALTMAGGGGSGCIGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMHFLHTIESQFKALAISSSSDFASGEASDRNGSSEEDMDVLKNLIDPLADDQELKGQLLRKYSGCLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVVDPSHPHHQYYMDTVLGNPYPMI 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0447 383 Pfam KNOX2 domain 184 230 IPR005541 GO:0003677|GO:0005634
Lele48g0447 383 Gene3D - 294 356 - -
Lele48g0447 383 ProSiteProfiles ELK domain profile. 269 289 IPR005539 GO:0003677
Lele48g0447 383 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 87 358 - -
Lele48g0447 383 SUPERFAMILY Homeodomain-like 291 367 IPR009057 -
Lele48g0447 383 Pfam Homeobox KN domain 309 348 IPR008422 GO:0003677|GO:0006355
Lele48g0447 383 ProSiteProfiles 'Homeobox' domain profile. 289 352 IPR001356 GO:0003677
Lele48g0447 383 SMART HOX_1 291 356 IPR001356 GO:0003677
Lele48g0447 383 SMART KNOX2_2 181 232 IPR005541 GO:0003677|GO:0005634
Lele48g0447 383 FunFam Homeobox protein knotted-1-like 2 294 356 - -
Lele48g0447 383 ProSitePatterns 'Homeobox' domain signature. 327 350 IPR017970 GO:0000981|GO:0006355
Lele48g0447 383 SMART KNOX1_2 131 175 IPR005540 GO:0003677|GO:0005634
Lele48g0447 383 Pfam ELK domain 269 290 IPR005539 GO:0003677
Lele48g0447 383 SMART ELK_2 269 290 IPR005539 GO:0003677
Lele48g0447 383 CDD homeodomain 301 353 IPR001356 GO:0003677
Lele48g0447 383 Pfam KNOX1 domain 134 171 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0447 Lele-ChrLele48 3959919 3965317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0447 108 382 Homeobox Transcription Factor Family AT1G62360 74.643 3.84e-125 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele48g0447 KNOX2 1.4e-21 No_clan