LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele48g0438	ATGACCATAAAAGCAAACACCAAATTCTTAGTTCGTCTTTTGTTTCTTTTTATGATTCTGATTCTCAGAGTCGAAGCTCACTGTATGTCTGGTTGCAATCTTGCTTTAGCTTCGTACTACATCTGGGAAGGCGCAAATCTCACGTACATAAGCGAAATCTTCGGCCAGGATATTACTGAGATTCTAAAGCACAATCCAACAATCCCCAATCCGGATTATGTTCGGAGCAACACCCGAATCAACGTGCCGTTCACGTGCGATTGCTTGAACGGCGTCTTCTTAGGTCACACTTTCACTTACAAAATCCAGCCCGGCGATACGTACCGTAAAATTGCTCAGGAAGCTTTTTCTAGCCTGACGACCGAGGATTGGTTGGAGAGGGTGAACAGATATGAAGCTACAAACATACCAGTAGCCGTTGGGATTAACGTCACCATCAATTGCTCATGCGGCGATAGGCGTGTGTCGAGGGACTATGGATTGTTTTTGACATACCCACTTCGGAGCGGCGACAAATTATCGGAGCTAGCGGCGGCTGCCGGTGTTACGGCGGAGCTCATACAGAGGTATAATCCCGCCTCCGATATCAACGCGGGGAGTGGACTGGTGTTTGTGCCGGCGAAAGATGAAAAGGGAAGTTTTTTACCTCTACAAAGTAGATCTGGTGAGTGGATACTACGCACCGTTTCGGCACTGAATCATGAAAGAATATCTGGAGGAGCCATTGCTGGAATATGTATTGGAGCAGTTTTTGGGGTCTTACTATTGGCACTTGTTCTGTATCTTGTTCTATATAGAAGCAAGAAGGTGGAAGAGGCTTCCCTTCTTCCTGGGCTATCTCAAGATCAGTATCTTCAAATTGCACACTGTTCAGGAAGCAGCTTGGAGAAGGCTTCAGAACCTGTTGACGTGGCTTCTCCAAGGTTGAATGGAATCACAGTAGACAAGTCAGTAGAGTTCTCATATGAGGAGCTTGCCAAAGCTACCGATGGCTTTTCTATTTCTAATAAGATTGGTCAAGGTGGCTTTGGATCTGTTTACTACGCAGAGCTTCGAAATGAGAAAGCTGCAATTAAGAAGATGGATATGCAAGCTTCAAAAGAATTCCTTGCTGAACTCAAGGTTCTGACACATGTTCACCACTTGAACTTGGTGCGCTTAATAGGATACTGTGTTGAGAGCTCTTTATTTTTGGTCTATGAGTACATTGAGAATGGAAATTTAGGACAACATTTACGTGGGTCAGGAAGAGAACCATTATCATGGTCAACTAGAGTTCAAATTGCCCTTGATGCAGCAAGAGGACTTGAATACATCCATGAACATACAGTTCCTGTCTACATTCATCGCGACATTAAATCAGCAAACATTTTGATTGATAAGAACTTTCGTGCAAAGGTTGCAGATTTTGGTCTGACAAGGCTTACTGAATATGGAAGTTCTTCACTTCATACTCGCCTTGTGGGTACATTTGGCTATATGCCTCCAGAATATGCGCAATACGGCGAAGTTTCGGCCAAAATAGATGTATATGCTTTTGGAGTAGTGCTATATGAACTCATATCTGCTAAAGAAGCTATTGTGAAGACAAACGAGCCTGTGAACGAATCAAGAGGACTTGTTGCCTTGTTTGAAGAGGTTTTAGAGCAGCTAAATGACAAAGAACAGCTTCTTGAACTTGTCGATCCTAGGCTTGGTGCTGACTACCCTTTTGAATCAGTATATAAGGTGGCTCAACTTGCAAAAGCTTGCACACTTGATAATCCACAACTAAGGCCAAGCATGAGATCAATTGTAGTTGCACTTATGACACTTTCTTCTTCAACTGAAGATTGGGATGTTGGCTCCTTTTATGAAACCCAAGCTATGATGCATTTCATGGCTGGAAGATAG	1893	0.4337	MTIKANTKFLVRLLFLFMILILRVEAHCMSGCNLALASYYIWEGANLTYISEIFGQDITEILKHNPTIPNPDYVRSNTRINVPFTCDCLNGVFLGHTFTYKIQPGDTYRKIAQEAFSSLTTEDWLERVNRYEATNIPVAVGINVTINCSCGDRRVSRDYGLFLTYPLRSGDKLSELAAAAGVTAELIQRYNPASDINAGSGLVFVPAKDEKGSFLPLQSRSGEWILRTVSALNHERISGGAIAGICIGAVFGVLLLALVLYLVLYRSKKVEEASLLPGLSQDQYLQIAHCSGSSLEKASEPVDVASPRLNGITVDKSVEFSYEELAKATDGFSISNKIGQGGFGSVYYAELRNEKAAIKKMDMQASKEFLAELKVLTHVHHLNLVRLIGYCVESSLFLVYEYIENGNLGQHLRGSGREPLSWSTRVQIALDAARGLEYIHEHTVPVYIHRDIKSANILIDKNFRAKVADFGLTRLTEYGSSSLHTRLVGTFGYMPPEYAQYGEVSAKIDVYAFGVVLYELISAKEAIVKTNEPVNESRGLVALFEEVLEQLNDKEQLLELVDPRLGADYPFESVYKVAQLAKACTLDNPQLRPSMRSIVVALMTLSSSTEDWDVGSFYETQAMMHFMAGR	630

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele48g0438	630	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	447	459	IPR008271	GO:0004672\|GO:0006468
	Lele48g0438	630	Pfam	Protein tyrosine and serine/threonine kinase	334	601	IPR001245	GO:0004672\|GO:0006468
	Lele48g0438	630	SUPERFAMILY	Protein kinase-like (PK-like)	311	602	IPR011009	-
	Lele48g0438	630	FunFam	LysM receptor kinase 2	311	402	-	-
	Lele48g0438	630	ProSiteProfiles	Protein kinase domain profile.	332	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele48g0438	630	SMART	serkin_6	332	604	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele48g0438	630	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	13	616	IPR044812	GO:0019199\|GO:0045087
	Lele48g0438	630	Gene3D	Phosphorylase Kinase; domain 1	317	402	-	-
	Lele48g0438	630	FunFam	PTI1-like tyrosine-protein kinase 3	403	616	-	-
	Lele48g0438	630	ProSitePatterns	Protein kinases ATP-binding region signature.	338	360	IPR017441	GO:0005524
	Lele48g0438	630	Gene3D	Transferase(Phosphotransferase) domain 1	403	621	-	-
	Lele48g0438	630	CDD	STKc_IRAK	338	599	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele48g0438	Lele-ChrLele48	3861734	3869138	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele48g0438	10	630	Receptor kinase-like Gene Family	AT3G21630	55.008	0.0	690

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Lele48g0438		PK_Tyr_Ser-Thr	1.5e-48	CL0016