Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0396 ATGCAGCCTGGACCTGGCATGGCTCCCCCAAACATGGGTCAACAACCTACCCAGCAATACCAGCAGCAACAACCCTACATGATGATGCCACCACAGGCTCAGGCGCCACCTATGTGGGCTCCATCTGCCCAGCCCCCGCCGCCGCAGCAGGCTGTTGCTCCGCCGCAACCCATGCAACACCTCCAGCCGAGTAGCGTCGATGAGGTCCGTACCCTTTGGATCGGCGATTTGCAGTACTGGATGGATGAAAACTATCTTTATAATTGTTTTGCGCATACCGGCGAGGTGGCTTCTGTAAAAGTCATTCGGAATAAGCAAACTAATTCATCGGAAGGTTATGGGTTTATTGAGTTTTTCACTCGTGCTGCTGCAGAGAGAATTCTTCAAACATTTAATGGCACAATTATGCCTAATGGGGGACAAAACTTTAGATTGAATTGGGCAAGTTTTAGTTCGGGTGATAGGCGTCATGATGATTCTCCAGATTACACAATTTTTGTTGGAGACTTGGCTGCCGATGTTACAGATTACCTGCTTCAGGAGACATTTAGGGCCAGCTATCCCTCAGTTAAGGGTGCAAAAGTGGTAATTGATAGGCTCACTGGGCGGACGAAGGGTTATGGTTTTGTCAAGTTTGGAGATGAGAATGAACAGATACAAGCTATGACTGAGATGCAAGGGGTTCTTTGCTCAACAAGACCCATGCGAATCGGGCCAGCCACAAACAAAAATATTGGAGGACAGCAAAAAGCTTCCTATCAGAATCCTCAAGGGTCACAGAACGAGAATGATCCAAATAATACAACTATTTTCGTTGGCAATTTGGATCCTAATGTTACAGATGATCATTTAAGGCAAGTTTTTGGCCAGTACGGAGAATTAATACATGTGAAGATTCCAGCAGGCAAGAGATGTGGATTTGTCCAATTTGCCGATAGGAGCTGTGCCGAAGAGGCTCTGCGAATACTAAATGGATCAGTGTTGGGCGGACAAAATGTCCGCCTTTCATGGGGCCGCAGTCCATCAAACAAACAGGCTCAGCCAGATCCAAGCCAGTATGGAGGATATTATGGGTATGCTCAAGGGTATGAGAATTATGGATACCCTCCTGCTGCTACACAGGATCCCAACATGTATGGAAGCTATCCAGGTTATACTAACTACCAACCACCACAGCAACAACAGCAAATGGGGTATAGCTAA 1203 0.4688 MQPGPGMAPPNMGQQPTQQYQQQQPYMMMPPQAQAPPMWAPSAQPPPPQQAVAPPQPMQHLQPSSVDEVRTLWIGDLQYWMDENYLYNCFAHTGEVASVKVIRNKQTNSSEGYGFIEFFTRAAAERILQTFNGTIMPNGGQNFRLNWASFSSGDRRHDDSPDYTIFVGDLAADVTDYLLQETFRASYPSVKGAKVVIDRLTGRTKGYGFVKFGDENEQIQAMTEMQGVLCSTRPMRIGPATNKNIGGQQKASYQNPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELIHVKIPAGKRCGFVQFADRSCAEEALRILNGSVLGGQNVRLSWGRSPSNKQAQPDPSQYGGYYGYAQGYENYGYPPAATQDPNMYGSYPGYTNYQPPQQQQQMGYS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0396 400 FunFam Polyadenylate-binding protein RBP45C 155 246 - -
Lele48g0396 400 SUPERFAMILY RNA-binding domain, RBD 146 256 IPR035979 GO:0003676
Lele48g0396 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 340 IPR000504 GO:0003723
Lele48g0396 400 MobiDBLite consensus disorder prediction 30 54 - -
Lele48g0396 400 SUPERFAMILY RNA-binding domain, RBD 46 149 IPR035979 GO:0003676
Lele48g0396 400 MobiDBLite consensus disorder prediction 242 268 - -
Lele48g0396 400 SMART rrm1_1 164 238 IPR000504 GO:0003723
Lele48g0396 400 SMART rrm1_1 71 146 IPR000504 GO:0003723
Lele48g0396 400 SMART rrm1_1 269 336 IPR000504 GO:0003723
Lele48g0396 400 FunFam Polyadenylate-binding protein RBP45C 247 350 - -
Lele48g0396 400 CDD RRM1_SECp43_like 71 151 - -
Lele48g0396 400 CDD RRM2_SECp43_like 162 241 - -
Lele48g0396 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 242 IPR000504 GO:0003723
Lele48g0396 400 MobiDBLite consensus disorder prediction 11 29 - -
Lele48g0396 400 Gene3D - 162 238 IPR012677 -
Lele48g0396 400 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 57 353 - -
Lele48g0396 400 Gene3D - 7 159 IPR012677 -
Lele48g0396 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 150 IPR000504 GO:0003723
Lele48g0396 400 CDD RRM3_NGR1_NAM8_like 267 338 - -
Lele48g0396 400 MobiDBLite consensus disorder prediction 379 400 - -
Lele48g0396 400 MobiDBLite consensus disorder prediction 368 400 - -
Lele48g0396 400 Gene3D - 244 349 IPR012677 -
Lele48g0396 400 MobiDBLite consensus disorder prediction 1 61 - -
Lele48g0396 400 SUPERFAMILY RNA-binding domain, RBD 253 366 IPR035979 GO:0003676
Lele48g0396 400 MobiDBLite consensus disorder prediction 239 268 - -
Lele48g0396 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 333 IPR000504 GO:0003723
Lele48g0396 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 137 IPR000504 GO:0003723
Lele48g0396 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 228 IPR000504 GO:0003723
Lele48g0396 400 FunFam Polyadenylate-binding protein RBP45 9 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0396 Lele-ChrLele48 3484397 3487895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0396 267 346 Eukaryotic Initiation Factors Gene Family AT4G34110 34.483 2.47e-06 47.8