Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0388 ATGGACTCTCAAAGGCTGTTACTTTCCCGAGAAAACCCTGGGCCCCTGGTTTTCCCTACTGGGCGAGCACTCCATCCTGTCACTGCAAAATCCATGCCCGCTGAGATGGCTCAGAAGCCAGTTCCTCCTGCGATATTGGAACGATTCAAGGCTCTGCTCAAGCGGCGCGACGATGAACGGAGGGCTTTGTTGGACGACGATGCGCCACCGCCGTCCACTGAGGATATTGTGCGGCTTTACGAGATAGTCTTGTCTGAGCTTACTTTAAATTCGAAGCCCATTATCACCGAACTTACCATCATTGCGGGAGACCAGAAGGAGCATGGGAAGGGTATAGCTGATGCAATTTGCGATCGAATTCTTGAGGTGCCTTTGGAGCAAAAGCTTCCTTCACTATATCTTTTAGACAGTATTGTGAAGAATATTGGTGGGGAGTATGTTAGATACTTCTCCTCACGTCTTCCTGAAGTATTCTGTGTAGCATATCGGCAAGTTCAGCCTTATTTACATCAAGCAATGCGCCATCTCTTTGGTACCTGGTCAACAGTCTTTCCAGCTTCTGTTCTTCGCAAGATTGAAGCGCAGCTGCATTTTTCTCAAGCAGTTAATAATAAGAATATGTCATCTAGCACTAATCCCCCTAGGATGTCTGAAGCTACACAGCGATCTCACGGCATTCATGTTAATCCAAAATACCTGCGACAGTTGGAAAGCTCAACCATGGACACTGATGGGGCTGAAATGCTGGATTCGACAAGAAGTGTGGGACATACAAATTTTGGCCTCGGAACTAATAAGATGCATCAGGCTTCAATTAGCAGGCATGGAAAACATTATCCTGGTGATGGTCGGAATCAATTGCAATTTTCTACAAATGGACATCAGCGCCAAAGTCCAAGAGCTCTTATTGATGCCTATGGCAGTGACAAAAGGGTGGAAACTTCAATCAATAAGCTGTTGGTTGAACCGCTTGACATAAATGGTATGGACAACAAGGTGGTGTCAACTCCATGGCAGAATACTGAAGAGGAGGAGTTTAATTGGGAAGATATGAGTCCAACATTAGTGGAGCATAAGAGAAGTAATGGTATCTTACCGTCATCAATTATTTTGTCTAGGGATAGATCTAGTGGTATTGCTGCAAATAATGCTGCTGCTTTGAGCCAAGAAGCCAGAGGTGGTTGGGTTAATCAATCTCTGCTTCCTCCCATTAATGATCCTTCTATTATAGCAGAAGATGCATTTGTGCGTTCGGGTAATGGTGGTGGATCATTGGGTCTGGTCTCCCATCCTCCTCCTGATGCCTGGAAGATTTCTCCTCATTTGCCTAATTCTACACAACACATTAATATTAGAGGTCAAACAAGGAATGCTCACGTGTCTCCTATTGATAGCATTCCAATTACTAAAGTAAACTTGCATGGGCTTGAGGCTCGTCCGCCAACTATACCTGCATCTTTTCGAACTAGGCCCCCTGTAAATGTGCATGCTAGTCATCCGCCCTCCTTAAAACCAATTTTTTCATTGCAGAAGGATGCTAGGAACCAATTTGAAGGAATAAATAGTAGTAACACCATTTTAGATCAAGGTGCCACTAAATCTTCATTCATGCCTGAACAGCTATTGGACACGGGTGAGAACAATAATATTGGTAAATTAACAATTCCTCAGATTCCTAATCAGCTATCCGGGCTAATTTCATCAAACCAGTATAACCGTGGACAAGCATTACAACGTCAAAATTTTCCACCTCAGGATATGCGAGAAAGTTTTGGTGCAGCGCAAGCTCCAGCAGCTTCTCCATTTAATCATGGGGCCCCTTTGCAAAGACACGGTGCTGCTATCAGCACAACTGTGTCCATGTCGTTACCTATTGGACGGTTTCCTTTACCAGTCCAAAACATGGCAAACAACACTTTTCCTATACAGCAGGGAGCCTTGCGTCCATTTCCAGCTCCTCGTCCTCCATCACAAGTGATGCCTCATACAAATGATAGTCCATATACCTCGGGCCAACAGCCAGCTGGTGCATTTTCTGGTCTGATCAATTCACTTATGGCACAAGGTTTGATCTCATTGACTGGACAAGCCCCTGCACAGGATTCTGTTGGAACTGAATTTAATCCTGATGTTCTGAAGATCCGGCATGAGTCTGCAATTAGTGCTTTATATTCTGATCTCCCTCGACAATGCACTACTTGTGGCCTTCGATTCAAGAGTCAAGAGGAGCACAGTAGTCATATGGATTGGCATGTGACTAAGAATCGGATGTCTAAAAATCGTAAGCAGAAGCCTTCTCGCAAGTGGTTTGTGAGTGAGAGAATGTGGCTTAGTGGTGCAGAGGCATTGGGAACAGAAGCTGTACCTGGTTTTTTGCCAACTGAGACCATGGAGGAAGATAAAGAAGATGAAGAGATGGCTGTGCCGGCTGATGAAGACCAGAATACATGTGCGTTATGTGGAGAGCCTTTTGAAGAGTTTTATAGTGATGAAACTGAGGAATGGATGTACAGAGGAGCTGTATACCTAAATGTGCCCAAGGGAACAGTTCCAGGCATGGATAGGTTGCAGTTAGGTCCAATCGTTCATGCTAAATGCAGATCTGAATCTAGTGCTGTCCCCCCTGAAGAATTTAGACAGGATGATGTGGGCGCTGATGAAGAGGGTAGTCAAAGAAAACGAATGCGGAGTTAA 2694 0.448 MDSQRLLLSRENPGPLVFPTGRALHPVTAKSMPAEMAQKPVPPAILERFKALLKRRDDERRALLDDDAPPPSTEDIVRLYEIVLSELTLNSKPIITELTIIAGDQKEHGKGIADAICDRILEVPLEQKLPSLYLLDSIVKNIGGEYVRYFSSRLPEVFCVAYRQVQPYLHQAMRHLFGTWSTVFPASVLRKIEAQLHFSQAVNNKNMSSSTNPPRMSEATQRSHGIHVNPKYLRQLESSTMDTDGAEMLDSTRSVGHTNFGLGTNKMHQASISRHGKHYPGDGRNQLQFSTNGHQRQSPRALIDAYGSDKRVETSINKLLVEPLDINGMDNKVVSTPWQNTEEEEFNWEDMSPTLVEHKRSNGILPSSIILSRDRSSGIAANNAAALSQEARGGWVNQSLLPPINDPSIIAEDAFVRSGNGGGSLGLVSHPPPDAWKISPHLPNSTQHINIRGQTRNAHVSPIDSIPITKVNLHGLEARPPTIPASFRTRPPVNVHASHPPSLKPIFSLQKDARNQFEGINSSNTILDQGATKSSFMPEQLLDTGENNNIGKLTIPQIPNQLSGLISSNQYNRGQALQRQNFPPQDMRESFGAAQAPAASPFNHGAPLQRHGAAISTTVSMSLPIGRFPLPVQNMANNTFPIQQGALRPFPAPRPPSQVMPHTNDSPYTSGQQPAGAFSGLINSLMAQGLISLTGQAPAQDSVGTEFNPDVLKIRHESAISALYSDLPRQCTTCGLRFKSQEEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSERMWLSGAEALGTEAVPGFLPTETMEEDKEDEEMAVPADEDQNTCALCGEPFEEFYSDETEEWMYRGAVYLNVPKGTVPGMDRLQLGPIVHAKCRSESSAVPPEEFRQDDVGADEEGSQRKRMRS 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0388 897 Pfam CID domain 89 190 IPR006569 -
Lele48g0388 897 ProSiteProfiles CID domain profile. 72 200 IPR006569 -
Lele48g0388 897 MobiDBLite consensus disorder prediction 870 897 - -
Lele48g0388 897 MobiDBLite consensus disorder prediction 650 675 - -
Lele48g0388 897 MobiDBLite consensus disorder prediction 867 897 - -
Lele48g0388 897 SUPERFAMILY ENTH/VHS domain 71 202 IPR008942 -
Lele48g0388 897 MobiDBLite consensus disorder prediction 661 675 - -
Lele48g0388 897 SMART 558neu5 75 197 IPR006569 -
Lele48g0388 897 MobiDBLite consensus disorder prediction 204 224 - -
Lele48g0388 897 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 60 883 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lele48g0388 897 CDD CID_Pcf11 77 197 - -
Lele48g0388 897 FunFam polyadenylation and cleavage factor homolog 4 69 197 - -
Lele48g0388 897 ProSitePatterns Zinc finger C2H2 type domain signature. 731 751 IPR013087 -
Lele48g0388 897 Gene3D - 68 197 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0388 Lele-ChrLele48 3434681 3441590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0388 670 897 C2H2 Transcription Factor Family AT4G04885 72.807 6.70e-107 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele48g0388 CID 3.8e-10 CL0020