Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0371 ATGAAGAGAAAGTCCAGTTCAGGTCGCCAAAAGATCCCTATTGAGAAAATACCAAAGAAAAGTCATCTTCAAGTCACATTCTCAAAGCGTCGCTCGGGGCTCTTCAAGAAAGCCAGCGAGCTTTGCACGCTCTGCGGCGTTGAAATCGCCATCATCGTCTTCTCCCCGGCGGACAAGGCCTTCTCCTTCGGCCACCCGGAGGTGGAATCCATCATCGACCGGTATATCACCCGAAACCCTCCGTCGGAATCCGGGGCTCACCCGCTGGTGGAGGCTCACCGGAAAGAAAACGTCCGGGAGCTGAACATGCAGCTGACACAGGTTCTTGGGCAACTGGAGATGGAGAGGAAGAGAGGAGAAGAGCTGGACCAGGTGAGAAAGGCGAGGCAGAGACAGTTCTGGTGGGAAAACCCTATTGAAGAATTAGGGTTTAATGAATTGCAGCAACTTTTGGTTTCAATGGAGGAACTGAAGAAGGAGTTAGGGAAGATGGCGAACAAGATGTTGATGATGGAGCATAATAATAGTTTGACTGCAGCTGATTCTTCATCAGTTATTGTTGGAGGAAGAGCACAACATGGTGGATTTGGAAACTATAATAACAATGATGTGTTTGAGAATCAACATGTTATGAACAACATTAATGCTGCTGCTTCGTCCAGTAATATTCTTCCTCCTCATCAACATGCCTATAACAATCTCAATTGTAGGCATGGATATCTATGA 726 0.4711 MKRKSSSGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPADKAFSFGHPEVESIIDRYITRNPPSESGAHPLVEAHRKENVRELNMQLTQVLGQLEMERKRGEELDQVRKARQRQFWWENPIEELGFNELQQLLVSMEELKKELGKMANKMLMMEHNNSLTAADSSSVIVGGRAQHGGFGNYNNNDVFENQHVMNNINAAASSSNILPPHQHAYNNLNCRHGYL 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0371 241 SUPERFAMILY SRF-like 8 83 IPR036879 GO:0003677|GO:0046983
Lele48g0371 241 PANTHER MADS BOX PROTEIN 9 163 - -
Lele48g0371 241 CDD MADS_MEF2_like 8 75 IPR033896 GO:0000977|GO:0045944
Lele48g0371 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Lele48g0371 241 Gene3D - 88 183 - -
Lele48g0371 241 FunFam Agamous-like MADS-box protein AGL62 19 85 - -
Lele48g0371 241 Coils Coil 147 174 - -
Lele48g0371 241 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Lele48g0371 241 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Lele48g0371 241 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Lele48g0371 241 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Lele48g0371 241 Coils Coil 95 115 - -
Lele48g0371 241 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Lele48g0371 241 Gene3D - 19 87 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0371 Lele-ChrLele48 3293939 3294664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0371 4 226 Type I MADS-box Gene Family AT5G60440 43.966 2.49e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele48g0371 SRF-TF 3.1e-23 No_clan