Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0370 ATGGCGGAACCAATTCCACCGAAGAAGACGAGAGGCGTAAGGAGGAAAATCGAACTCAAACCGATGGGAAACCCTAAAATGCTCAGCACAAAACGTAAAGCTGACCTTTCTAAGAAGGCGGACGAGCTCTGCGTTGGCACCGGCGTCGAGGTCGCTTTCATGGTGATGTCTCCGGGAGGCAAGCCTTTCACATTCGGCAGTCCCGACGTCGACAGCGTGATCACGAGGTACAAGAGTCAAGTGCCGACGTCGCTGAGGATAGAGCAACAGAAAGCTGAGCTTAATGGAATCATGGAACGGTCGGATTATGAGGATAAGCGAGGAGAGGAACTGAAAAAAAGGAGACAACTGAGGAACGAGACATGGATGGCTGCACCGACTCAGACTCTTTCTAGTGCTAAACAACAGGTGATGACGGAGCGACTGGTGGAAATGCAGAAAACACTCTCTCAACCTCCGGGCTCCTACTCATATTGGTTCTTCTCGGGGCCGCCGCCTCCGAGTTCTTCCTTTACTGCATTGTTGACTCAGAAACCAGAGCTCCGAGCAAGTTCCGGCCTTTCATGTGGGTCATTCCTGTCACCGGGGACTTCAAATCAGCATTTTGGAAGTAACATGGTACTCACACCAAGTGGAAACTTCTACACAGGCCAATCATCGTCATCGGCGGTGGTGCCGGCATGGACTCGGAACAATATGTTTTGGGGTGAATCATCGTCAATGGTGCTGGCAGGGAATCTGAATAAGATGTTTGAGTATAACATCGCGCAGAACAGCCATGAGAACTTCTACACAGGCAATTTGTCGTCAAAGGTGCCCGCGGGGACCCAAAATCGTATGTTTGAGAATAACATGAATATTCTCAACAACAATGACAACTTCTACACACGTGGATCATCGCCGATGGTGCCGGCGAAGAATCAAAATCGTATGTTAGAGGATATATATAATATGTTGATGAAAGACGACGACGACGACAACGTGTACACGTGTGGATTCTCGTCAATGGAGGCAGGAGCTCGGAGCACAATGTCTAATGATAGGATGAGGTTGGAAGCTATTGAAAACTTCTTTAGAAGTGGGTCATTGACAGAAGAACCGACTCTGAATCAAATGATTGATGAAAACATTATGAATATTCCTCCACATGATAATAATAACTTCTATACAAGTGGTGGATCCTCGGTGGTGGCGCCACCGGCTTATAAGAATAGTCAAACATTTGATCAAATGGTTCCTCCACATGATAACCACTACGCTTGTGAACCTTCTGCGATGATGCCGACAACTGATGATGAGAATTTTGACGAAAACTTGAGGTTGTTTTTAGATGATCAAATCTTTGGAAGCAGTTCCTCTATGATGCACCCAGCGCAAAGTCGGATGTTTGGTGCAAATGAGATGCCGCAGCAGCAGCAGCCTCTACCTTGTGATGGATATGGTGCTGGACCTTCATGGTTCAACTGA 1467 0.4731 MAEPIPPKKTRGVRRKIELKPMGNPKMLSTKRKADLSKKADELCVGTGVEVAFMVMSPGGKPFTFGSPDVDSVITRYKSQVPTSLRIEQQKAELNGIMERSDYEDKRGEELKKRRQLRNETWMAAPTQTLSSAKQQVMTERLVEMQKTLSQPPGSYSYWFFSGPPPPSSSFTALLTQKPELRASSGLSCGSFLSPGTSNQHFGSNMVLTPSGNFYTGQSSSSAVVPAWTRNNMFWGESSSMVLAGNLNKMFEYNIAQNSHENFYTGNLSSKVPAGTQNRMFENNMNILNNNDNFYTRGSSPMVPAKNQNRMLEDIYNMLMKDDDDDNVYTCGFSSMEAGARSTMSNDRMRLEAIENFFRSGSLTEEPTLNQMIDENIMNIPPHDNNNFYTSGGSSVVAPPAYKNSQTFDQMVPPHDNHYACEPSAMMPTTDDENFDENLRLFLDDQIFGSSSSMMHPAQSRMFGANEMPQQQQPLPCDGYGAGPSWFN 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0370 488 Gene3D - 27 90 IPR036879 GO:0003677|GO:0046983
Lele48g0370 488 SUPERFAMILY SRF-like 14 87 IPR036879 GO:0003677|GO:0046983
Lele48g0370 488 Coils Coil 100 120 - -
Lele48g0370 488 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Lele48g0370 488 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 30 65 IPR002100 GO:0003677|GO:0046983
Lele48g0370 488 SMART madsneu2 12 68 IPR002100 GO:0003677|GO:0046983
Lele48g0370 488 PANTHER MADS BOX PROTEIN 14 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0370 Lele-ChrLele48 3285889 3287355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0370 17 156 Type I MADS-box Gene Family AT2G24840 34.395 6.74e-17 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele48g0370 SRF-TF 7.1e-11 No_clan