Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0318 ATGGCTTTGGAGGCTCTGAATTCTCCTACTGTAACTCCCAATCCTATGTTCAAAGAAGATGACGATCTTCACTCGCTCGAGGCTTGGACCAAGGGCAAGCGATCTAAACGTCACCGTTTTGATCAGAATCCGCCTTCCGCTGATGAAGAGTACCTCGCTATCTGCCTCCTCATGCTTGCTCGCGGCGGCAACGCTAATCCAATTACGACGTCGTCTACGTCCCCTGATCCGATGAAGCTTTCTCATAAGTGCTCTGTCTGTAATAAGTCCTTCTCCTCCTACCAGGCGCTCGGAGGACACAAGGCCAGCCACCGCAAGTCCTCCTCCTCCGCCTCCGACCATCACCCTCCCGCAGATAATTCATCCGCCCCCGCCTCGACCGCCGCAGTAGCTGGCACCGGGAAGCTGCATCAGTGTTCAATCTGTCACAAGTCTTTCCCGACCGGTCAGGCTCTCGGTGGTCACAAGCGCTGCCACTATGACGGCGGCAACGCCAACAACAGCGGTACCGGTGGAACCACGGTGGTCACATCGTCTGAGGGGAACACCTCATCGGTCACGCACACCAACCGCGGGTTTGACCTGAACCTCCCCGCGCCTTTGAACGACTTCTCCCCGGTAGGTTTCGTCGGCGCCGCCACCTCCAAGAGTGTCAAGATCGGAGAAGAAGAGGTGGAGAGCCTATTGCCGACTGCCGCCACCAAGAAGCCTCGGCTGTTCATGGACCAAGAATGA 735 0.5714 MALEALNSPTVTPNPMFKEDDDLHSLEAWTKGKRSKRHRFDQNPPSADEEYLAICLLMLARGGNANPITTSSTSPDPMKLSHKCSVCNKSFSSYQALGGHKASHRKSSSSASDHHPPADNSSAPASTAAVAGTGKLHQCSICHKSFPTGQALGGHKRCHYDGGNANNSGTGGTTVVTSSEGNTSSVTHTNRGFDLNLPAPLNDFSPVGFVGAATSKSVKIGEEEVESLLPTAATKKPRLFMDQE 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0318 244 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Lele48g0318 244 ProSitePatterns Zinc finger C2H2 type domain signature. 139 159 IPR013087 -
Lele48g0318 244 MobiDBLite consensus disorder prediction 113 128 - -
Lele48g0318 244 MobiDBLite consensus disorder prediction 1 23 - -
Lele48g0318 244 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 35 199 IPR044653 GO:0003700
Lele48g0318 244 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Lele48g0318 244 SMART c2h2final6 82 104 IPR013087 -
Lele48g0318 244 SMART c2h2final6 137 159 IPR013087 -
Lele48g0318 244 SUPERFAMILY beta-beta-alpha zinc fingers 82 159 IPR036236 -
Lele48g0318 244 Pfam C2H2-type zinc finger 82 106 - -
Lele48g0318 244 Pfam C2H2-type zinc finger 137 161 - -
Lele48g0318 244 MobiDBLite consensus disorder prediction 98 129 - -
Lele48g0318 244 Gene3D Classic Zinc Finger 80 159 - -
Lele48g0318 244 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 159 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0318 Lele-ChrLele48 2894635 2895369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0318 1 239 C2H2 Transcription Factor Family AT1G27730 49.004 1.61e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele48g0318 zf-C2H2_6 1.2e-11 CL0361