Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0308 ATGACAAGTGCTTCGGAGCTATTCTACAATCGGAGGTATCGTTTGGGACGAACCTCTGATTATCTGGGGAACGATTCGTTGCCCGATAGAATCCTTCCCCCCGATATCAATAACCGTCGCCATCATCACCATCTACATGATTTCAGTGATGGTGAGACTCTCAGACGGTCCACGCCAACGCGGCGGTTATTTCATCGTTTGTCCTCCACGGAGCGAGAATCAGCTAGACTTGACCTAAGGCATAACCGGTCTCTTTCAAACATGGCAAATTCTGCTGAAAATGTTAGCAGTTTCAGGGGCCCTAGAGTGACTGGCAATGACAGGTTACCCATAGCTGTGGTACATGCAAGGGCAAGACTCCTTCAGAGGTTGAGTGCAGAACCTACCTCTAGAAACAGGCAAAGGGGTAGAGTCTCACTAGATATTGATGACACGAGGCATAACTTCAGGGACGCAGAGAGCAGCGAATCATCAACTACTGGTTTAGCTGAGGGTTCCCTGTTAACTGATTTAACTTTACAAATGGAAAGGTCCCAACTCTCACATGAAGTAAACAAAAAACCACCTGGACTCAACCAAGAGGGCATGGACCGTTTGCATATGGAAATCTTTGGCATCAGGGAGACACAAACGGAAGAATTGGAATCCAGAGTACTACAGGATTGTGGCATATGCCTAGAAACTTTTCTGGAAGGAGATAAGCTGATACATTTGCCATGTGGGCACAGATTCCACTACGTGTGTTTGAATCCATGGGTTAGAAAATGTGGGGATTGCCCGTTCTGTAGAAGAGATATTGCAACTGCATACAGTGTAATGTCGCTGTTTTTGGCGTTGTATAGCTATTTTTGTGATTATGAAAGATACCATGAAGTTGCATTTTTTTTTTCCGAAGGGGGTTTAGCAAAACCACCAGATGAGAACTTGAGAAAAGGTGACACCTTTGGAAACAGAGCCGTCGCCAAAGAGTACCAGAAGGCTCGCTTACGACGCGTCAACTATAAAAATCGCCACTTTAGCCCGTGTTCTTCGTTCTTAAGCGGCATTGCCCTTTCCCCCTTCCTCTGTACTCCTGACTTCTCTCCCTTAAACCTCGTGATTTCTATTCCTCCATTACCAATTTTACCTCTCAAAACTGAATTCATTCTTCAAATGGTGATGCGTTCGTTTTATGGCTCGCTGGAACGCTGTTTTGGCGGTCTTGGACGTGGAAGCGACTGTCTCCTATGGCACTCGGACTTGAAGCCACACGCCTCCGGTGATTTCTCCATCGCCGTCGCTCAAGCCAATTCCAGCCTCGAAGATCAGAGCCAAGTCTTTACGTCTCCCTCTGCCACCTACGTCGGTGTCTGTGATGGCCATGGCGGTCCTGAAGCTTCTAGATTTGTTAATAAACGCCTCTTTCCTTATTTACAAAAATTTTCGGCTGAAAATGGAGGATTATCAGTGGATGTGATAAAAAAGGCGTTTCATGCAATCGAGGAGGATTTCTTAAGCTTGGTGAAGCAATCGTTGCAAACAAGTCCACGGATTGCTTCCGCAGGATCATGTTGTCTTCTTGGTGCAATTTCTGATAATGTATTATATGTTGCGAACCTTGGTGATTCTAGAGTAGTTCTTGGCCGGAAAGCTTTGGGGAGTCACAAGCATCCGGTGGTGGCACAACGGTTGTCAACTGATCATAATGTATCTATTGAGGAGGTGAGGAGAGAGGTCAAATCTCTTCATCCTGATGATGAACACATTGTGGTTTTTAGTCATGGAACTTGGCGGATTAAAGGCATTATACAGGTGTCAAGATCTATAGGTGATGTGTATCTCAAGAATCCTGACGCTTGTAACCCTATTCATTTGAAACGTCCGGCAATGACAGCCGAACCATCGGTCATTGTCAAGGAGCTTGGATCACAAGATTTGTTTCTGATATTTGCATCAGATGGGCTCTGGGAACAATTAACTGATGAAGAAGCAGTTGAGATTGTGTACAAATATCCAAGAGCTGGAATTGCCAAGAGATTGGTAAGAGCTGCTCTCGAGTCAGCAGCGAAGAAGAGGGAGATGAGATATAATGACATGAAGAAAATTAACAGGGGAGTAAGAAGACTCTTCCATGATGACATTACTGTTATAGTAGTGCATCTTGATCACCGAAAAGTTAAGAAAAATGCTGTCAGCTCCATAAGTGCTCCTATGGATATTTTCTCCCTAAATTCAGATGAAACAGAACAGAGTATCTTTCGTACAGTTGCCTGA 2253 0.4474 MTSASELFYNRRYRLGRTSDYLGNDSLPDRILPPDINNRRHHHHLHDFSDGETLRRSTPTRRLFHRLSSTERESARLDLRHNRSLSNMANSAENVSSFRGPRVTGNDRLPIAVVHARARLLQRLSAEPTSRNRQRGRVSLDIDDTRHNFRDAESSESSTTGLAEGSLLTDLTLQMERSQLSHEVNKKPPGLNQEGMDRLHMEIFGIRETQTEELESRVLQDCGICLETFLEGDKLIHLPCGHRFHYVCLNPWVRKCGDCPFCRRDIATAYSVMSLFLALYSYFCDYERYHEVAFFFSEGGLAKPPDENLRKGDTFGNRAVAKEYQKARLRRVNYKNRHFSPCSSFLSGIALSPFLCTPDFSPLNLVISIPPLPILPLKTEFILQMVMRSFYGSLERCFGGLGRGSDCLLWHSDLKPHASGDFSIAVAQANSSLEDQSQVFTSPSATYVGVCDGHGGPEASRFVNKRLFPYLQKFSAENGGLSVDVIKKAFHAIEEDFLSLVKQSLQTSPRIASAGSCCLLGAISDNVLYVANLGDSRVVLGRKALGSHKHPVVAQRLSTDHNVSIEEVRREVKSLHPDDEHIVVFSHGTWRIKGIIQVSRSIGDVYLKNPDACNPIHLKRPAMTAEPSVIVKELGSQDLFLIFASDGLWEQLTDEEAVEIVYKYPRAGIAKRLVRAALESAAKKREMRYNDMKKINRGVRRLFHDDITVIVVHLDHRKVKKNAVSSISAPMDIFSLNSDETEQSIFRTVA 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0308 750 SUPERFAMILY RING/U-box 221 270 - -
Lele48g0308 750 FunFam Probable protein phosphatase 2C 42 412 722 - -
Lele48g0308 750 SUPERFAMILY PP2C-like 429 716 IPR036457 -
Lele48g0308 750 SMART FANCL_C_2 218 271 - -
Lele48g0308 750 Pfam Protein phosphatase 2C 442 683 IPR001932 -
Lele48g0308 750 Gene3D - 412 725 IPR036457 -
Lele48g0308 750 SMART ring_2 222 262 IPR001841 -
Lele48g0308 750 CDD RING-H2_PA-TM-RING 221 263 - -
Lele48g0308 750 ProSiteProfiles PPM-type phosphatase domain profile. 421 714 IPR001932 -
Lele48g0308 750 ProSiteProfiles Zinc finger RING-type profile. 222 263 IPR001841 -
Lele48g0308 750 CDD PP2Cc 426 714 IPR001932 -
Lele48g0308 750 PANTHER PROTEIN PHOSPHATASE 404 713 - -
Lele48g0308 750 ProSitePatterns PPM-type phosphatase domain signature. 447 455 IPR000222 GO:0043169
Lele48g0308 750 MobiDBLite consensus disorder prediction 134 153 - -
Lele48g0308 750 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 269 IPR013083 -
Lele48g0308 750 MobiDBLite consensus disorder prediction 125 163 - -
Lele48g0308 750 Pfam Ring finger domain 221 263 IPR001841 -
Lele48g0308 750 SMART PP2C_4 415 712 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0308 Lele-ChrLele48 2803777 2809915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0308 406 730 PP2C-type Phosphatase Gene Family AT3G51370 54.942 1.88e-125 377