Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0253 ATGGCTCAGGTTCAGATTCTGCCTCAAAATGTGATGCCGGGAGCTAACGGTTCTCCTGCGACTGGCGGGGGAAACCAGTTCGTGCCGACGTCGCTCTATGTTGGAGATCTTGATGTGAACGTTACGGAATCGCAGCTCTATGATATGTTTAACCAAGCTGGTCAGGTTGTCTCCGTTAGGGTCTGTAGGGATTTGACCAGCCGGCGATCACTTGGTTACGGTTATGTCAATTTTAGCTCGGCGCCAGAAGCTGCCAGAGCAATGGATTTGCTGAACTTCACTCCTCTTAATAACAAGCCCATCCGTATTATGTATTCGCATAGAGATCCCAGTATTCGAAGAAGTGGAGCCGGAAATATATTTATTAAGAATCTTGATAAGGCAATTGACCACAAAGCTTTGCATGATACCTTCTCTGCATTTGGGAATATCCTTTCTTGCAAAGTAGCTACAGATTCATCTGGCCAGTCAAAAGGATATGGCTTTGTGCAATTTGATAATGAGGAATCTGCTCAAAAGGCCATAGAGAAATTGAACGGTATGCTGATGAATGATAAACAGGTGTATGTGGGACCCTTTCTTCGCAAGCAAGAGAGGGAAAGTGCTGTTGACAAAACAAAATTTAACAACGTTTTTGTAAAGAATTTATCTGAGACAACCACCGATGAAGATTTAAAGAGAATTTTTGGTGAATTTGGAACAATTACAAGTGCTGTAGTGATGAGAGACTCGGATGGCAAATCTAAGTGCTTTGGATTTGTGAACTTCGAGAATGCTGATGATGCTGCCAGGGCTGTTGATTCTCTTAATGGGAAGAAAATTGATGACAAGGAATGGTATGTTGGAAAAGCTCAAAAGAAATCCGAAAGGGAGCTTGAATTGAAACATCGATTTGAACAGAGCATGAAAGGAGCCGCTGATAAATATCAAGGGGCTAACTTGTATGTTAAAAATTTAGATGATAGCATTAGCGATGATAAACTGAGGGAGCTCTTCTCTCCATTCGGTAACATTACCTCATGCAAGGTCATGCGAGACCCCAATGGGATAAGCCGAGGATCAGGGTTTGTTGCATTCACGACTCCTGAAGAGGCTTCAAGAGCTCTTTTTGAGTTGAATGGGAAAGCGGTAGCAAGCAAGCCTCTATATGTTGCTTTAGCTCAACGTAAAGAAGATAGAAGAGCTAGACTGCTGGCTCAGTTTGCTCAAATGCGGCCTGTTGCAATGGCACCATCTGTAGCTCCCCGTATGCCTATGTACCCCCCTGGTGGTCCCGGTATTGGACAACAAATATTTTATGGTCAAGGCCCTCCTGCCATCATTCCTTCCCAGCCGGGATTTGGGTATCAACAACAACTTGTATCTGGAATGAGGCCTGGAGGAGTTCCTATGCCAAATTTCTTTATGCCAATGGTCCAGCAAGGACAGCAGGGCCAGCGTCCAGGTGGAAGACGTGCAGGGGCAGTCCAGCAGAACCAGCAGCCTGTTCCACTAATGCAACCGCAGATGCTTCCAAGGGGGCGTATGTACCGATATCCTCCTGGTAGGGGGCTGCCTGATGTTGGTGGAATGCCAATTCGTGAAGCAGCTCTGCCCCAGCAAATTCCTATAGGGGCTCTGTCTTCTGCCCTGGCAAATGCTACTCCAGAGCAGCAGAGGACGATGCTGGGTGAGAACCTTTACCCTCTTGTGGAACAGTTGGAGCCTGAAAATGCGGCAAAAGTGACAGGCATGCTTCTGGAGATGGACCAGACTGAGGTTCTGCACTTGCTCGAATCACCCGAGGCTATGAAATCAAAGGTGGCTGAGGCGATGGATGTTCTGAGGAATGTTTCTCAGCAGCAGCAAGCCGGTGGAGCCGTGGATCAATTGGCCTCATTATCACTTAATGACAACCTTGTTTCTTGA 1908 0.4649 MAQVQILPQNVMPGANGSPATGGGNQFVPTSLYVGDLDVNVTESQLYDMFNQAGQVVSVRVCRDLTSRRSLGYGYVNFSSAPEAARAMDLLNFTPLNNKPIRIMYSHRDPSIRRSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLMNDKQVYVGPFLRKQERESAVDKTKFNNVFVKNLSETTTDEDLKRIFGEFGTITSAVVMRDSDGKSKCFGFVNFENADDAARAVDSLNGKKIDDKEWYVGKAQKKSERELELKHRFEQSMKGAADKYQGANLYVKNLDDSISDDKLRELFSPFGNITSCKVMRDPNGISRGSGFVAFTTPEEASRALFELNGKAVASKPLYVALAQRKEDRRARLLAQFAQMRPVAMAPSVAPRMPMYPPGGPGIGQQIFYGQGPPAIIPSQPGFGYQQQLVSGMRPGGVPMPNFFMPMVQQGQQGQRPGGRRAGAVQQNQQPVPLMQPQMLPRGRMYRYPPGRGLPDVGGMPIREAALPQQIPIGALSSALANATPEQQRTMLGENLYPLVEQLEPENAAKVTGMLLEMDQTEVLHLLESPEAMKSKVAEAMDVLRNVSQQQQAGGAVDQLASLSLNDNLVS 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0253 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Lele48g0253 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 382 IPR000504 GO:0003723
Lele48g0253 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 102 IPR000504 GO:0003723
Lele48g0253 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 188 IPR000504 GO:0003723
Lele48g0253 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 190 IPR000504 GO:0003723
Lele48g0253 635 Gene3D - 531 615 - -
Lele48g0253 635 Gene3D - 294 396 IPR012677 -
Lele48g0253 635 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 31 609 IPR006515 GO:0003723
Lele48g0253 635 FunFam Polyadenylate-binding protein 199 294 - -
Lele48g0253 635 SMART rrm2_1 119 191 IPR003954 GO:0003676
Lele48g0253 635 SMART rrm2_1 313 385 IPR003954 GO:0003676
Lele48g0253 635 SMART rrm2_1 31 104 IPR003954 GO:0003676
Lele48g0253 635 SMART rrm2_1 210 282 IPR003954 GO:0003676
Lele48g0253 635 Gene3D - 25 118 IPR012677 -
Lele48g0253 635 Gene3D - 119 191 IPR012677 -
Lele48g0253 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Lele48g0253 635 FunFam Polyadenylate-binding protein 119 192 - -
Lele48g0253 635 SUPERFAMILY RNA-binding domain, RBD 30 199 IPR035979 GO:0003676
Lele48g0253 635 SMART poly_2 548 611 IPR002004 GO:0003723
Lele48g0253 635 CDD RRM1_I_PABPs 31 110 - -
Lele48g0253 635 SUPERFAMILY PABC (PABP) domain 493 629 IPR036053 GO:0003723
Lele48g0253 635 SMART rrm1_1 31 104 IPR000504 GO:0003723
Lele48g0253 635 SMART rrm1_1 210 282 IPR000504 GO:0003723
Lele48g0253 635 SMART rrm1_1 313 385 IPR000504 GO:0003723
Lele48g0253 635 SMART rrm1_1 119 191 IPR000504 GO:0003723
Lele48g0253 635 CDD RRM3_I_PABPs 208 287 - -
Lele48g0253 635 FunFam Polyadenylate-binding protein 295 400 - -
Lele48g0253 635 SUPERFAMILY RNA-binding domain, RBD 209 393 IPR035979 GO:0003676
Lele48g0253 635 CDD RRM2_I_PABPs 116 192 IPR045305 -
Lele48g0253 635 CDD RRM4_I_PABPs 311 389 - -
Lele48g0253 635 Gene3D - 195 293 IPR012677 -
Lele48g0253 635 FunFam Polyadenylate-binding protein 17 118 - -
Lele48g0253 635 FunFam Polyadenylate-binding protein 532 614 - -
Lele48g0253 635 Pfam Poly-adenylate binding protein, unique domain 544 608 IPR002004 GO:0003723
Lele48g0253 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Lele48g0253 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723
Lele48g0253 635 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 536 613 IPR002004 GO:0003723
Lele48g0253 635 PANTHER RNA BINDING PROTEIN 30 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0253 Lele-ChrLele48 2453154 2457060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0253 1 630 Eukaryotic Initiation Factors Gene Family AT4G34110 72.327 0.0 902