Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0242 ATGTCTGATCTATCAAATTCAGATAACAGTGCTGAAATCATTATGGAGAAATCCTTGAGGGAGAAGAAGAGAGATCTTAGCACAGATGAAGCAGAAGAAGATCTTCGTCGTGAAGCTCATTCCTCATCAGAGAGAGAAAGAAGGAAGAAGATGAGGCTCTACATGAGAGAACTTGAAGATTTGGTCCCTTCTCTTCATGATGTTAAGGCAGACAAGGCAACCATTGTTGAAGAAACCATGAAGTACATTAAAAACCTAGAAGACATTGTTGAGAAGTTGGAGAAAATGAAGAGAGAGAAACTCGAATCTGCCTCAAACTCTGCTAATAATCCTACGGATGGATCTTCTTCCTCCATGGCCACTCCTGCGGGCACATCATTCCTGCAAAAGCCGATAGGGTTTCAGACTTGGATTTTTCCAAATGTGGTGGTGGGCATTTGCGGAGAAGAAGCTCAGTTTGGTGTGTTCTTTCCCAAGAACGAAGAACTCTTCAGTGCCATCTTTAGTGTTCTTCATAAGCATAAGATTAAGGCAGACAAAGTAACAGTGGTAGATGAAACATTGAACTACATAAGAGTGTTGGAGCAAACTTTGAAAGACCTGGAAAAGAAGAAGCAGGAACGACTCCTTCAATCGTCTGTCTCTAATAATGTTGGAACTGCAAGAGAGGCCTTCATAGCTGAACAAGTAGGTTCGTGTCCATCAAGTCCACAGAATTATAATAAGCCAGTAGGGTTTCGAACTTGGACTTCTGTAAATGTGGTAGTCAACATTTGTGGCCAAAATGCTCAATTCAGCGTGTGCTCTTTCAAGAACTGCATCACCACCAACTGCTGTGTTCTCGACAACACTGCTGGCGAAATTAATATGGAGAAATCCTTGAGAAAGAAGAAGACAGATATTAGCACAGTTGATTTAGAATATCATCGTGAATCTCATTCCTCGGTAGAGAGAGAAAGAAGGAAGAAGATGAAGCTCTTTATGAGAGAACTTCAAGATTTGGTCCCTTCTCTTCATACTAAGATTCCGGGACTAGCTCTTACAAGTCCTACGCTTCACAGAGAACATCCCTCTGTTCTGTACCTGAAGAACCTAACTAGCGAGCCTATCATCGAACCTGTTGTGGCCGTCGACTTCCCGGCGCCGGAAAATCTTCTCTGGCTTTTGTGTTTACTGTTTGAAGTTCGGCGTCTGCCGTGTGGTTGTCTGTTGCAAGGTCGTCACGCCCGCGTTCGTCTCACCCTCGAAATGGCTCAAATGGTTTGCGGTTCTTGTCGTCGACTTCTTTCATATCCACGAGGCACCAGACATGTCAAGTGTTCTTGCTGTCAGACAGTAAACCTTGTGTTAGAAGCTGATCAGGTTGGGCAAGTCAAGTGTGGGAGCTGTGCAGTTCTGCTAATGTACCCATATGGCGCTTCACAAGTTAGGTGTTGTTCCTGCCAGTTTGTGACGAAAATTGAGGAACACAACAAGCGGCCGCCGTGGTCTGTACTGCAACAGCAAGGGAAATCCTCTCCGCCCAGATCAGTTTCTTAG 1539 0.4438 MSDLSNSDNSAEIIMEKSLREKKRDLSTDEAEEDLRREAHSSSERERRKKMRLYMRELEDLVPSLHDVKADKATIVEETMKYIKNLEDIVEKLEKMKREKLESASNSANNPTDGSSSSMATPAGTSFLQKPIGFQTWIFPNVVVGICGEEAQFGVFFPKNEELFSAIFSVLHKHKIKADKVTVVDETLNYIRVLEQTLKDLEKKKQERLLQSSVSNNVGTAREAFIAEQVGSCPSSPQNYNKPVGFRTWTSVNVVVNICGQNAQFSVCSFKNCITTNCCVLDNTAGEINMEKSLRKKKTDISTVDLEYHRESHSSVERERRKKMKLFMRELQDLVPSLHTKIPGLALTSPTLHREHPSVLYLKNLTSEPIIEPVVAVDFPAPENLLWLLCLLFEVRRLPCGCLLQGRHARVRLTLEMAQMVCGSCRRLLSYPRGTRHVKCSCCQTVNLVLEADQVGQVKCGSCAVLLMYPYGASQVRCCSCQFVTKIEEHNKRPPWSVLQQQGKSSPPRSVS 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0242 512 Pfam LSD1 zinc finger 422 446 IPR005735 -
Lele48g0242 512 Pfam LSD1 zinc finger 460 484 IPR005735 -
Lele48g0242 512 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 308 365 IPR011598 GO:0046983
Lele48g0242 512 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 27 177 IPR044278 GO:0003700|GO:0006355|GO:0009960
Lele48g0242 512 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 31 98 IPR036638 GO:0046983
Lele48g0242 512 MobiDBLite consensus disorder prediction 14 48 - -
Lele48g0242 512 Pfam Helix-loop-helix DNA-binding domain 310 338 IPR011598 GO:0046983
Lele48g0242 512 Pfam Helix-loop-helix DNA-binding domain 36 87 IPR011598 GO:0046983
Lele48g0242 512 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 35 86 IPR011598 GO:0046983
Lele48g0242 512 SMART finulus 314 358 IPR011598 GO:0046983
Lele48g0242 512 SMART finulus 41 92 IPR011598 GO:0046983
Lele48g0242 512 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 309 342 IPR036638 GO:0046983
Lele48g0242 512 Gene3D - 26 103 IPR036638 GO:0046983
Lele48g0242 512 Gene3D - 298 368 IPR036638 GO:0046983
Lele48g0242 512 MobiDBLite consensus disorder prediction 103 122 - -
Lele48g0242 512 MobiDBLite consensus disorder prediction 100 122 - -
Lele48g0242 512 Coils Coil 184 211 - -
Lele48g0242 512 CDD bHLH_AtbHLH_like 40 94 IPR045239 -
Lele48g0242 512 Coils Coil 76 106 - -
Lele48g0242 512 MobiDBLite consensus disorder prediction 1 48 - -
Lele48g0242 512 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 419 449 IPR005735 -
Lele48g0242 512 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 457 486 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0242 Lele-ChrLele48 2390319 2399980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0242 159 281 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 33.537 6.12e-13 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele48g0242 HLH 5.9e-10 No_clan