Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0239 ATGATGGAGACCCCGAATAGATCTACATCAACTGGGTCTTCAGATTCAGCAGAACAGAAGGACAGAGATATAACTTATTCAAATTCAAATGCTATCCTGCCTCCATGTCCTTTAAACCAGCAACTTTCTTGTTACTTGGATGGCCCGGTGGCTATACTTTGGGATATTGAAAATTGTCCTGTTCCGAGTGATGTGCGCCCTGTTGATGTTGCTGGGAATGTAACAATGGCTTTGCAGGTGCATCCAATAATTAAAGGAGCCGTTGTGATTTTTTCTGCTTATGGGGATTTCAATAATTTCCCCAGGCGACTCAGAGAGGGTTGCCAAAGAACTGGTGTTAAACTCACTGATGTTCCCAGTGGGAGAAAAAATCCTGCTGATAAGGCTATCTTGGCTGACATGTTCTTGTTTGCACTTGACAACCGACCACCTTCTTCTATAATGCTGATATCCGGAGATGTTGATTTTGCTCCTGCACTTCATGTTCTCGGTCAACGTGGATATACTATTATTCTTGTCGTCCCCACCAGGGTGGGTATGCCAACTTCCTTTGGCAGTGCTGGTAAATTTGTCTGGGACTGGCCTAGCATTGCTCGTGGAGAAGGTTTTGTGCCTCCCTTGAAGGCTCTAGTGCCACCTCATGTTGTTCCTACCGAGGCTGTTGCAGATCTGATAGGGTGCCATATCAAGGGCAACTTTGATGGACAAAATGGAGAAGAAGCTATTGTTTATGGAGGGATCTCACAGAACTCCCATAACTCCAAGAGTTGCTCATTTGTGTCACAATCTGTGTCTGAATACAAAAGTGATACATGGAAGGCATCATGCTTTCAGACGGCTCTGAGGGCACACAGCCTACCATCAACTCAGAACAATGTTTCAAGAGTATCATCTATGTCTTCTTCTGGTGACCATGGGGATCTGAATGGGGTGAAGTGTCAGCTGGTAAAGTTGCTTGAACTTTCTGGAGGTTGTTTGCTTCTGGCTCATGTTCTACCAGAGTATCAGAAATATTTTGGTAGGTCTCTCTCTCCATCTAAATATGGGGTACGCAAATTAGCGAGTCTTTTCAAGAAAATGGGTGATCCATTTTCTGTGGAAGGGAAAGGGCCTCGGATATTTGTATATCTCCGAAACCGGCTAGTGTGCCCTTTGTCTCAGGCAAGCAATGATGAGAAAGGAAAAGGGATTCAGGAAGAGAATGAAGAAATTGCCCATGCTGGTTGCTCTGTAGATGTAGAAAGAATAGTCACAGAAGAACATGATGAGAAAAATAGCATAGAAAAGGTTCACCAAGGGAAAGCAGCCAGAAGTGAAATTCATTACCGAATTCTCGAGCAATTCAAGCATGAGCTGCAAGAGATTCTCGTAATATATTCTTGCCCAATATTCATAGATTGTTTCGATGACATTTACCTGCTACGATACAAGAAGCCACTGGAATACCAGAGACTGGGCGTGGACAAGTTAGAGGAATTGATTGAGAAAGTGAGTGATGTGGTAGCACTGCATGAAGAACCAGTAAGCAAGAGGAAGTTCCTGGCGGCTGTGGATGGTTAG 1560 0.441 MMETPNRSTSTGSSDSAEQKDRDITYSNSNAILPPCPLNQQLSCYLDGPVAILWDIENCPVPSDVRPVDVAGNVTMALQVHPIIKGAVVIFSAYGDFNNFPRRLREGCQRTGVKLTDVPSGRKNPADKAILADMFLFALDNRPPSSIMLISGDVDFAPALHVLGQRGYTIILVVPTRVGMPTSFGSAGKFVWDWPSIARGEGFVPPLKALVPPHVVPTEAVADLIGCHIKGNFDGQNGEEAIVYGGISQNSHNSKSCSFVSQSVSEYKSDTWKASCFQTALRAHSLPSTQNNVSRVSSMSSSGDHGDLNGVKCQLVKLLELSGGCLLLAHVLPEYQKYFGRSLSPSKYGVRKLASLFKKMGDPFSVEGKGPRIFVYLRNRLVCPLSQASNDEKGKGIQEENEEIAHAGCSVDVERIVTEEHDEKNSIEKVHQGKAARSEIHYRILEQFKHELQEILVIYSCPIFIDCFDDIYLLRYKKPLEYQRLGVDKLEELIEKVSDVVALHEEPVSKRKFLAAVDG 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0239 519 CDD LOTUS 308 377 - -
Lele48g0239 519 CDD PIN_limkain_b1_N_like 49 175 - -
Lele48g0239 519 ProSiteProfiles OST-type HTH domain profile. 307 379 IPR025605 -
Lele48g0239 519 Pfam NYN domain 49 174 IPR021139 GO:0004540
Lele48g0239 519 MobiDBLite consensus disorder prediction 1 21 - -
Lele48g0239 519 PANTHER LIMKAIN B LKAP 14 386 IPR024768 GO:0005777|GO:0010468|GO:1903231
Lele48g0239 519 ProSiteProfiles OST-type HTH domain profile. 444 518 IPR025605 -
Lele48g0239 519 Gene3D - 307 375 IPR041966 -
Lele48g0239 519 Gene3D - 440 511 IPR041966 -
Lele48g0239 519 MobiDBLite consensus disorder prediction 1 15 - -
Lele48g0239 519 CDD LOTUS 445 507 - -
Lele48g0239 519 Pfam OST-HTH/LOTUS domain 445 507 IPR025605 -
Lele48g0239 519 Pfam OST-HTH/LOTUS domain 309 371 IPR025605 -
Lele48g0239 519 Gene3D - 48 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0239 Lele-ChrLele48 2365237 2366796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0239 45 210 C2H2 Transcription Factor Family AT5G61190 40.964 3.36e-29 120