Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0213 ATGATCATTCACATGATGATGATTTCACCGTCTTCTTCTTCTTCTTCAGCTCCTTCTCAGCCACCCCATGTTCGTTTTCATCATTGGGCCCCATCTTCTTCTCCGGTACCGGCATCGGCACCGTCCCCTTCTCCGGCTAATCCGGCCCCGACTCTCCTTCCGGTACCTGTAAGCGAGACATCACCTCAGCCATCAAAGTTGTCGATTGACTTCAGTCCACCACTGATTGCCATGGTGGTCGTCGTTGCCGCCGCCTTCCTTCTTGTCACCTATTCCCGCCTAATCTCCCGCCATCTCATGCCTCCTTTAACCCGCATCGCTCGCCGGTGGCGCCGCCGTAGGCGACGTTCCTACCTCCCCTCCTCCACCGGCGACCTCGACTCGCTTCCTTATGATTCTCCTTTTGAGCCAATTGATGGCCCTCACATGTTCTCCCCTTATGGTCTCGACGAGTCCATCATCAAGACCATACCGTTTTCCCTCTACACCGCCAAATCAAAGAATCAATTCGAAGAGTCTCGTCGCGATTGCGCGGTTTGTTTGTTGGAGTTCGAAGACGATGAGTACGTCCGAACGCTGCCGTTTTGTTCTCACACTTTTCATTTGGATTGCATCGACGTTTGGCTCAGGTCGCACGCGAATTGCCCTCTCTGCCGCGCCGGAGTTTTGTGCGCGGAGTCTCCGTTCACGCCAATGATGGCTGCGAGGATTCGACCGAGCCTCGACGACGACACGATTTTGCATAGAATCAGTATGGACCCTCTGGTCGAAGCTCCATCGCCAGTGGCTCATTCTCTGGTTTCGGAGATAACTCCTTGCAACGAAGAGCAATCGCCAAGAACGAACCACGCAAATCCGGAGGAAGATCGATTCAACGGTGGTCGTGATTTCCTCCTGAAGCGATCCTACTCGTTCGGATTCGAACAGAGCTTAGCGTCGGAGAGAATGGTGATGGAACCGGCGACGGCTTCACCGTGGCGGTACCACCGAAGGGGAAGCAGTAGCAGCTTCTGGAGCAAAAGGCCATCGCCATTCGGATCGTTGGGAAAGTCCAGGGTGTTCTCGTTCAGATACTACAGAGGGATGAAGTCGCCGTTCTTCCGGAGACGAGGGTTCTTCCCCCCGTCGGAATCAAGCATGAGGTCATACAACGGAGGAGGGACCTCATCTCGTCGAAGCAAGTCTATAGCAAGCCCTATGTTCCTGAGGTCGTCGGCAGCGTTAGCAGCGGTGGGAGCAGCTGCTTTCTCGTCAAGTCGGCTAAGGTGCGGCGACCCGGAGGCTTTGCTGTCACCGGAGAGATACAAATAA 1311 0.5477 MIIHMMMISPSSSSSSAPSQPPHVRFHHWAPSSSPVPASAPSPSPANPAPTLLPVPVSETSPQPSKLSIDFSPPLIAMVVVVAAAFLLVTYSRLISRHLMPPLTRIARRWRRRRRRSYLPSSTGDLDSLPYDSPFEPIDGPHMFSPYGLDESIIKTIPFSLYTAKSKNQFEESRRDCAVCLLEFEDDEYVRTLPFCSHTFHLDCIDVWLRSHANCPLCRAGVLCAESPFTPMMAARIRPSLDDDTILHRISMDPLVEAPSPVAHSLVSEITPCNEEQSPRTNHANPEEDRFNGGRDFLLKRSYSFGFEQSLASERMVMEPATASPWRYHRRGSSSSFWSKRPSPFGSLGKSRVFSFRYYRGMKSPFFRRRGFFPPSESSMRSYNGGGTSSRRSKSIASPMFLRSSAALAAVGAAAFSSSRLRCGDPEALLSPERYK 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0213 436 MobiDBLite consensus disorder prediction 36 57 - -
Lele48g0213 436 MobiDBLite consensus disorder prediction 8 59 - -
Lele48g0213 436 FunFam RING-H2 finger protein ATL65 142 223 - -
Lele48g0213 436 SUPERFAMILY RING/U-box 165 224 - -
Lele48g0213 436 Pfam Ring finger domain 176 219 IPR001841 -
Lele48g0213 436 SMART ring_2 177 218 IPR001841 -
Lele48g0213 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 223 IPR013083 -
Lele48g0213 436 ProSiteProfiles Zinc finger RING-type profile. 177 219 IPR001841 -
Lele48g0213 436 CDD RING-H2_PA-TM-RING 176 219 - -
Lele48g0213 436 PANTHER RING-H2 FINGER PROTEIN ATL16 57 249 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0213 Lele-ChrLele48 2212891 2214201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0213 69 436 C3H Transcription Factor Family AT3G18930 53.250 1.48e-97 296