Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0200 ATGCCGCCTCCTTGTTTTCACAAGCTTGTTCTTCCATCCACCGTCCAAGCCGGTCAACTGAGGGTTCCAGATCATTTTTTGAGGAATTTTGGGGGGGAGCTCTCTACAATTGCTACCCTCTGTGTTCCTGATGGCAGTGTCTGGCGTATTTGTTTAAAAAGGGTAGACAACAAATTTTGGCTCCATGATGGTTGGAAGGACTTCGTTCAACGTTACTCCATTGGTGTTGGATGCCTTTTGGTGTTCAGATATGAAGGGAATTCATCTTTCAATGTTCATATTTTCAATTTGGCTGCTTCTGAGATAAACTATCAATTAGCAAATCGAAGTAATGATGAACGGCCTTACTTTACCAACCAACATATTTTTGATGAAATGGAAGATGAAGATTCCATTGAATACTCGGATTCAACACCTTCACATTTAACCCCTGGTGCATTTAATAACATGGTTATTGCGGGATCTGCGGATCAATTGACACCTGGCAAGAATTATACTCCTTCACCATTGCAGAATTTGTTTAATGGGTCTAAACTTAATAGCATAAACTGGGGAGATACCGTTTCTTCAAAGGGTGCCAATTCACAAAACAATCAATTGACCAAAGATAAAGGTGCTCAGTTCAATGCAGCTGAGTTTAAAAGGTCTACTGAAGAGTTGAAATTGCGTGCTTCCAATAATGAAATGCAGAGAGTTAAAAGAACTGTAAGAAAAAGGCGGAAAACTGATCCTAGTGGTGAAGAATCCTCTCCTCATAATGAAGAGGTGGTAGAAATGCGTTTTAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACTGTGACAGCAGAAGAAAGAGAAAGGGCAGTTAATGCTGCAAAAGCATATGAACCGCCTAATCCCTTCTGTAGGGTTGTCCTGCGGCCCTCCTATCTGTATAGGGGATGCATAATGTATTTGCCATCTTGCTTTGCAGAAAAGCATCTGAATGGGGTTTCAGGTTTCATCAAACTCCAGATTACTGAGGGGAGACAGTGGCCAGTTCGCTGCCTTTATAGAAGCGGTAGAGCCAAGTTAAGCCAAGGGTGGTTCGAATTCGCCCAGGATAACAACGTCAGGGAAGGTGATGTCTGTGTTTTCGAGCTGATTAGAGCGACGGAAGTAGTGCTGAAAGTTACTATATTCCAAGTCCTTGAAGAAGATGTGGGATTGTTGAACCCTCCCATGCCGCAAAACCCAAGCATGAGTCCAACTTCAAAACTGTTGAACAATCCCTTGCAGCAGCGAGATGTGAGCCCCATTAAAATGATTAGAAATTAG 1299 0.4211 MPPPCFHKLVLPSTVQAGQLRVPDHFLRNFGGELSTIATLCVPDGSVWRICLKRVDNKFWLHDGWKDFVQRYSIGVGCLLVFRYEGNSSFNVHIFNLAASEINYQLANRSNDERPYFTNQHIFDEMEDEDSIEYSDSTPSHLTPGAFNNMVIAGSADQLTPGKNYTPSPLQNLFNGSKLNSINWGDTVSSKGANSQNNQLTKDKGAQFNAAEFKRSTEELKLRASNNEMQRVKRTVRKRRKTDPSGEESSPHNEEVVEMRFRFYESASARKRTVTAEERERAVNAAKAYEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQITEGRQWPVRCLYRSGRAKLSQGWFEFAQDNNVREGDVCVFELIRATEVVLKVTIFQVLEEDVGLLNPPMPQNPSMSPTSKLLNNPLQQRDVSPIKMIRN 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0200 432 CDD B3_DNA 294 388 IPR003340 GO:0003677
Lele48g0200 432 PANTHER B3 DOMAIN-CONTAINING 3 380 - -
Lele48g0200 432 Gene3D - 273 392 IPR015300 -
Lele48g0200 432 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Lele48g0200 432 Gene3D - 2 98 IPR015300 -
Lele48g0200 432 SMART B3_2 6 98 IPR003340 GO:0003677
Lele48g0200 432 SMART B3_2 296 391 IPR003340 GO:0003677
Lele48g0200 432 MobiDBLite consensus disorder prediction 190 205 - -
Lele48g0200 432 ProSiteProfiles B3 DNA-binding domain profile. 296 391 IPR003340 GO:0003677
Lele48g0200 432 MobiDBLite consensus disorder prediction 240 254 - -
Lele48g0200 432 MobiDBLite consensus disorder prediction 229 254 - -
Lele48g0200 432 MobiDBLite consensus disorder prediction 190 209 - -
Lele48g0200 432 Pfam B3 DNA binding domain 299 389 IPR003340 GO:0003677
Lele48g0200 432 Pfam B3 DNA binding domain 8 96 IPR003340 GO:0003677
Lele48g0200 432 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Lele48g0200 432 SUPERFAMILY DNA-binding pseudobarrel domain 289 388 IPR015300 -
Lele48g0200 432 CDD B3_DNA 4 96 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0200 Lele-ChrLele48 2134485 2137911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0200 1 396 B3 DNA Binding Superfamily AT3G18990 47.990 2.88e-123 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele48g0200 B3 1.1e-17 CL0405