Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0191 ATGGGTTCGGTTCCTCCAGAACTGAGCTTGGATTTGAGACCCACTTTTGTTCCAAAGACAATCAGTGATTTCCTCTACGAGGTTTCCACGATCGGAAACGCCGCCGACAAGTTGTCGAGGTTCGATGAGTTTCTCAGGAGATTGGAAGAGGAAATGAGGAAGATCGACGCTTTTAAGCGTGAGCTTCCTCTCTGCATGCTTCTCTTAAACGATGCAATCTTGAATCTGAAGGAGGAATCCGCAAAACTCAGGGCACCTATTTCTCAGCCAGTGCTGGAAGAATTTATTCCCTTGACGAAAGAATGCGATCAGAAAAAGGATGATAAGAAAGAAAAGGAATGCAGAGATAAGAAGAATTGGATGAGTTCTGTTCAGCTCTGGAATACCGATAATCTTCCCACTACCAACAAGGCTTATGAGCAAAGACAACAACACTATGAATTAGAAAACAAGAAATGCGAAGAGGAAGGACAATCTGTGCCTGAAGATCCATTCCAATCTCGTAGAATCGGTGATAATGGATGCAGGGCGTTCTTGGCTTTTTCAACATATTCTAATATCCCTGCGACACCAGTGACAACTAAGGAAGAAAAGGAACACTCCATTAATGGGCTATCTCTTATGACTCCTGGTACTAAAAGTTTGAGGGAAGGTTCTGGTTCAAGTGGATCAAGAAGTAGCTCTAGCAGAGCAGTTTCTTCCTCGAGTCCCAGTTCACAGCCAATTATACCCACAGGTCATCAGCATCAGCCACAGAAGCAAGTTGCCCGGAAACAGAGGAGGTGCTGGTCCCCGGAGCTGCACCGAAGATTTATCAATGCATTACAGCAACTTGGAGGTTCTCTAGCGGCAACTCCAAAACAAATAAGAGAACTCATGCAGGTTGATGGCCTGACCAATGATGAAGTGAAGAGTCATTTACAAAAATATCGACTTCACACTCGCAGAACACCGTCTACCACAGCTGCTCCTGCTAATCAGTCTGTAGTTCTTGGAGGTTTGTGGATGTCGCCAGATCAGCACAATGAACCCTCCAAGGCTAGCAGTTCTGGGTCTGGTTCTCCTCAAGGTCCCCTGCAGTTAGCAGCATCCGGTGGAGGGATGTCTCGAACCGAAGGCGACAGCATGGAAGACGATGAAGATGATGAGAGCTTTAGCTGGAAAAGTCACGTTCACAAACCTGGAAAAGATGTATAG 1197 0.4586 MGSVPPELSLDLRPTFVPKTISDFLYEVSTIGNAADKLSRFDEFLRRLEEEMRKIDAFKRELPLCMLLLNDAILNLKEESAKLRAPISQPVLEEFIPLTKECDQKKDDKKEKECRDKKNWMSSVQLWNTDNLPTTNKAYEQRQQHYELENKKCEEEGQSVPEDPFQSRRIGDNGCRAFLAFSTYSNIPATPVTTKEEKEHSINGLSLMTPGTKSLREGSGSSGSRSSSSRAVSSSSPSSQPIIPTGHQHQPQKQVARKQRRCWSPELHRRFINALQQLGGSLAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRTPSTTAAPANQSVVLGGLWMSPDQHNEPSKASSSGSGSPQGPLQLAASGGGMSRTEGDSMEDDEDDESFSWKSHVHKPGKDV 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0191 398 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 387 IPR044787 GO:0003700|GO:0006355
Lele48g0191 398 MobiDBLite consensus disorder prediction 341 359 - -
Lele48g0191 398 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 257 315 IPR017930 -
Lele48g0191 398 MobiDBLite consensus disorder prediction 191 261 - -
Lele48g0191 398 MobiDBLite consensus disorder prediction 335 398 - -
Lele48g0191 398 MobiDBLite consensus disorder prediction 205 252 - -
Lele48g0191 398 Gene3D - 257 315 - -
Lele48g0191 398 FunFam Myb family transcription factor 257 315 - -
Lele48g0191 398 SUPERFAMILY Homeodomain-like 256 316 IPR009057 -
Lele48g0191 398 Pfam Myb-like DNA-binding domain 260 311 IPR001005 -
Lele48g0191 398 MobiDBLite consensus disorder prediction 383 398 - -
Lele48g0191 398 Coils Coil 136 156 - -
Lele48g0191 398 Coils Coil 41 61 - -
Lele48g0191 398 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 258 313 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0191 Lele-ChrLele48 2077399 2079362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0191 7 339 G2-like Transcription Factor Family AT2G03500 38.177 3.82e-60 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele48g0191 Myb_DNA-binding 6e-07 CL0123