Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0183 ATGGACGCAGCCGCATCACCGCCATACCACCACCCGCACTTGAAACAGCCGCCGCCACAGCCGCAGCACCACCAGCAGAACTCCAACGATGAGATCAGGACGATCTGGCTCGGTGACCTTCATCATTGGATGGACGAGAACTACCTAAATAGCTGCTTTGCTCACACGGGCGAGGTATATTCAGTGAAGGTTATACGAAATAAGCAAACTGGTCAGTCTGAGGGATATGGATTTGTTGAGTTTTATACACGTGCAACGGCTGATAAAATTTTACAGAGCTACAATGGTACTATGATGCCGAATACAGATCAGCCGTTCCGCCTAAATTGGGCTGCTTTCAGTTCGGGTGATAGGCGATCTGATGCTAATTCAGATTACTCTATATTTGTTGGGGACTTGGCTATAGATGTTACTGATGCTACGCTACAGGAAACCTTTGCAAGCAGATATTCATCTGTTAAGGGAGCAAAAGTTGTCATTGATTCTAGCACTGGCCGTTCAAAAGGTTATGGTTTTGTTAGGTTTGCTGATGAAAATGAGAGATCCAGGGCACTAACTGAAATGAACGGTCAGTATTGTTCAAGTAGGCCAATGCGAATAAGTATTGCAACTCCCAAGAAATCATTCGGACATCAACAACATTACTCTTCACAAGCTGTGGTGTTGGCTAATGGATATTCTTCTAATGGTGCTATGGCCCAAGGTTCCCAGTCTGAAGGGGACTCTTTTAACACAACTAATGCAGAGGAGGCAATTCAGGCATTGAATGGGACAGTAATAGGGAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAACAAGCATGGCATCTTGTACATGCCAGAGTCTAATATGAATGATAAGAACCAACATGCGTTGCATGAGATATGTAAAAAGGATAAATCAAAAGTCAATCACAGTTACACTGAATTGAAGTATGTTACAAAGCCACCTTTGTGTTCGAAGTTAGTTATGGCAGTCGATAAGCACTCTGTTGCCCATGAGCTCAAGAAACCAAAGGAAGTAACGAGGGTGGAAGTAGGGCAGAGCAACGGGCAGGATGGGCTAGCCCGCGCAGCAACAACTTGCTATGTAGCAGTGGAAGCTGCAGTCGCTGCGGAGGAAGAGGAATTGCAAATTGGTCGAGCTCTAAGCTCAGGTGGCTCTGGTGACGCCTTTCCAACAGAGCTAAGGTGGAAGAGGACTCCAACTCTCGAAGAATTGCTGGCGCAGTGGCACTTGCGGAGGAAGAAGAAACGATGA 1269 0.4641 MDAAASPPYHHPHLKQPPPQPQHHQQNSNDEIRTIWLGDLHHWMDENYLNSCFAHTGEVYSVKVIRNKQTGQSEGYGFVEFYTRATADKILQSYNGTMMPNTDQPFRLNWAAFSSGDRRSDANSDYSIFVGDLAIDVTDATLQETFASRYSSVKGAKVVIDSSTGRSKGYGFVRFADENERSRALTEMNGQYCSSRPMRISIATPKKSFGHQQHYSSQAVVLANGYSSNGAMAQGSQSEGDSFNTTNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHGILYMPESNMNDKNQHALHEICKKDKSKVNHSYTELKYVTKPPLCSKLVMAVDKHSVAHELKKPKEVTRVEVGQSNGQDGLARAATTCYVAVEAAVAAEEEELQIGRALSSGGSGDAFPTELRWKRTPTLEELLAQWHLRRKKKR 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0183 422 SUPERFAMILY RNA-binding domain, RBD 9 114 IPR035979 GO:0003676
Lele48g0183 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 113 IPR000504 GO:0003723
Lele48g0183 422 CDD RRM1_SECp43_like 34 114 - -
Lele48g0183 422 MobiDBLite consensus disorder prediction 1 28 - -
Lele48g0183 422 FunFam Polyadenylate-binding protein RBP47B 114 216 - -
Lele48g0183 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 198 IPR000504 GO:0003723
Lele48g0183 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 102 IPR000504 GO:0003723
Lele48g0183 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 205 IPR000504 GO:0003723
Lele48g0183 422 Gene3D - 32 112 IPR012677 -
Lele48g0183 422 SUPERFAMILY RNA-binding domain, RBD 125 274 IPR035979 GO:0003676
Lele48g0183 422 CDD RRM2_SECp43_like 125 204 - -
Lele48g0183 422 Gene3D - 113 218 IPR012677 -
Lele48g0183 422 SMART rrm1_1 127 201 IPR000504 GO:0003723
Lele48g0183 422 SMART rrm1_1 34 109 IPR000504 GO:0003723
Lele48g0183 422 FunFam Polyadenylate-binding protein RBP47B 32 112 - -
Lele48g0183 422 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 24 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0183 Lele-ChrLele48 2012475 2021734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0183 111 265 Eukaryotic Initiation Factors Gene Family AT4G34110 27.841 2.55e-09 57.4