Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0175 ATGGTGGTTTCTAAGTTAATATACGACGAATGCAGGCGACAACGGCTAGAAGAAAACAAGAAGAGAATGGAGGAACTAAACCTCAACAAGCTTGCTACTAGTTTGAAACCTTTACCTTCACCTAAGCCTTCCCCTATGGGTATATTCACTTGTTTTCTTCTCTCTTCTTCATCATCAGAAACTCTTATGAGCTTTGTTGGGTCTGGTTTTTTTGTTGTTGCCAAGCCTAGGGTGCCACGTCAGCCTTTTTTGGTGCAAATATTGAAGTTCTTGATGGGGATTGTTTTTGTTCTTGCAAGGTCGGCATTGAAGGGTCTTCCAGTTCATTTCTGCAAAACTCATCTTCCTCAACATGATGAGACAATAACTCTAATAGATGAGGATGGGAACGAGTCTCCTACCAAATACCGTGCTGATAAAACTGGTCTTAGTGGTGGTTGGCCAGGTTTCTCAATTGATCATGAACTATTTGATGGGGAGGCATTGGTGTTTCAATTGATGAAACCCACAAAATTTAAGGTGTTCATAATTAGAGCATATGAATCAGAAAACAAAGAGGAAGGAGATGAAGATTTGGATGCTCCACAATTGAACAGGAGCTCTAAAAGAGTCAGAGCAAGTGCTGATTATGATGAACATGGAGAGGACAAATCTTGA 657 0.4049 MVVSKLIYDECRRQRLEENKKRMEELNLNKLATSLKPLPSPKPSPMGIFTCFLLSSSSSETLMSFVGSGFFVVAKPRVPRQPFLVQILKFLMGIVFVLARSALKGLPVHFCKTHLPQHDETITLIDEDGNESPTKYRADKTGLSGGWPGFSIDHELFDGEALVFQLMKPTKFKVFIIRAYESENKEEGDEDLDAPQLNRSSKRVRASADYDEHGEDKS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0175 218 Gene3D - 81 182 IPR015300 -
Lele48g0175 218 SUPERFAMILY DNA-binding pseudobarrel domain 104 179 IPR015300 -
Lele48g0175 218 MobiDBLite consensus disorder prediction 184 218 - -
Lele48g0175 218 ProSiteProfiles B3 DNA-binding domain profile. 106 180 IPR003340 GO:0003677
Lele48g0175 218 CDD B3_DNA 106 178 IPR003340 GO:0003677
Lele48g0175 218 Coils Coil 13 33 - -
Lele48g0175 218 SMART B3_2 96 181 IPR003340 GO:0003677
Lele48g0175 218 Pfam B3 DNA binding domain 104 177 IPR003340 GO:0003677
Lele48g0175 218 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 95 184 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0175 Lele-ChrLele48 1927758 1929967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0175 1 201 B3 DNA Binding Superfamily AT3G19184 34.818 2.20e-28 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele48g0175 B3 1.2e-09 CL0405