Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0148 ATGGCGTCAAGCTCTCTGAGCAGAAAGAAGGCCTCTGATTCATCTTGGACACCGAAACAGAACAAGCTGTTTGAAAAGGCTCTTGCAAAATATGATAAGGACACTCCTGATCGATGGCAGAATGTGGCAAAAGCGGTTGGTGGAAAATCAGCTGAGGAAGTTAAGAGACACTATGAAATCCTCTTAGAGGACCTTAGACACATCGAATCTGGTCGTGTTCCCATCCCCAACTACAGATCTACCAGCAATGTTGATGAAGAAGAGCGGCTTATGAGGTATCTTCAGCTGAATTGA 294 0.449 MASSSLSRKKASDSSWTPKQNKLFEKALAKYDKDTPDRWQNVAKAVGGKSAEEVKRHYEILLEDLRHIESGRVPIPNYRSTSNVDEEERLMRYLQLN 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0148 97 SMART sant 12 64 IPR001005 -
Lele48g0148 97 ProSiteProfiles Myb-like domain profile. 8 62 IPR001005 -
Lele48g0148 97 CDD SANT 15 62 IPR001005 -
Lele48g0148 97 Gene3D - 7 75 - -
Lele48g0148 97 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Lele48g0148 97 ProSiteProfiles SANT domain profile. 11 66 IPR017884 -
Lele48g0148 97 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 87 IPR044636 GO:0003700
Lele48g0148 97 Pfam Myb-like DNA-binding domain 14 58 IPR001005 -
Lele48g0148 97 FunFam Transcription factor SRM1 8 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0148 Lele-ChrLele48 1748399 1749353 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele48g0148 Myb_DNA-binding 8.9e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1266 45 22589714 22590377 Lele48g0148 48 1748399 1749353 hybridization
Lele46g1358 46 20604696 20609000 Lele48g0148 48 1748399 1749353 hybridization