Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0116 ATGCGGCCGTCCGACCCGTCAAATCCGTCTTATGTGGCTAGGATTGAGCGGATCGAAGCTGCCTCGCGTGGCGCCAACGTGAAGGTCCACGTCCGGTGGTATTACCGGCCGGAGGAGTCAATCGGTGGCCGGAGGCAATTTTACGGCTCTAAGGAGGTCTTCCTTTCTGATCATTTTGATGTTCAGAGTGCCGATACGATCGAAGGCAAGTGTAAGATTCACAGTTTCGCGAGCTACACGAAACTTGAAGCTGTTGGAAACGAGGATTTCTTCTGTCGCTTCGAATACAATTCCGCCACCGGTGCTTTCAATCCTGACAGAGTGGCTGTGTACTGCAAATGTGAGATGCCCTACAACCCTGATGACCTAATGGTCCAGTGTGAGAGTTGCAGTGATTGGTTTCATCCTACTTGTATAGATATGACTGTGGAGGAAGCCAAAGGACTTGACCACTTCTTTTGTGAAAACTGTTCTGGCCAAGGTCAACAGAATGCACAAAATTCTCATACTTAA 513 0.4912 MRPSDPSNPSYVARIERIEAASRGANVKVHVRWYYRPEESIGGRRQFYGSKEVFLSDHFDVQSADTIEGKCKIHSFASYTKLEAVGNEDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCESCSDWFHPTCIDMTVEEAKGLDHFFCENCSGQGQQNAQNSHT 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0116 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 170 IPR013083 -
Lele48g0116 170 Pfam PHD-finger 111 158 IPR019787 -
Lele48g0116 170 PANTHER OS08G0421900 PROTEIN 1 168 - -
Lele48g0116 170 SUPERFAMILY FYVE/PHD zinc finger 101 159 IPR011011 -
Lele48g0116 170 Pfam BAH domain 3 106 IPR001025 GO:0003682
Lele48g0116 170 ProSitePatterns Zinc finger PHD-type signature. 112 157 IPR019786 -
Lele48g0116 170 ProSiteProfiles Zinc finger PHD-type profile. 109 160 IPR019787 -
Lele48g0116 170 SMART PHD_3 111 158 IPR001965 -
Lele48g0116 170 Gene3D - 1 105 IPR043151 -
Lele48g0116 170 ProSiteProfiles BAH domain profile. 1 107 IPR001025 GO:0003682
Lele48g0116 170 SMART BAH_4 1 107 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0116 Lele-ChrLele48 1544591 1546083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0116 7 109 Core DNA Replication Machinery Family AT4G14700 27.184 3.08e-08 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele48g0116 BAH 2.4e-18 No_clan