Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0094 ATGGACGAGTCTGTGACTGTGACAAAGACCGTACCAGGTTCCGAGGTGTTGAAGGGGGAGCAACCTTCGTCCAACTCGAATGTGTTAACTCAGCAAACGCCGGAGCAACTCGTGGCCAGAGCCATAGCTCCTGTGAAGGTGGAGTTCCTTCGTCCTCCTCCTGTTAGAACTTCCTCCACAACCCAGAACAAAGATGTTTCTGAAGACAAGGATAAGGCCTCTGTTCAATCCGGCGGATTGGTGAAGGAGAAGAAGTCCAAGCGCCAACTCAAGCGTGAACGTCGTCAGGAACAGAAGTCTGCTAAAAACATTTGTCCGGAAATTGCAAAGACAGGAGATATTAGTTCATGTCCTTACAAAGATAAATGCCGCTTCAGCCATGACTTAGAAGCCTTCAAGGCCCAGAAACCAACTGATTTAGAGGGAGAATGCCCTTTTTTCAAAGCTGAAGGTTCTTGTCCCTATGGATTAGCATGTAGATTTTCCAGCACGCATACAGAAGGCATGCCTTCTGAAAATCTGAATGATCGGAGAACAACTTCTGAAATAAATGGACTGAGCAAAGATGTTCAAAAGCTTTTGTGGAAAAATAAGATGCGCTTCTCCAAGGCAGATGCCAACCTCAAAGCTCTTGGACTTTGGGAATCATCTAAATTAAAACGGAACAACTTAGAAGATAAGGAGGGTGGCAACGTTGATTCAAATGATTGCCACAATGCTGATAATAATGGCTCTTGTGAAGTTACCAATGCCTTGGGTTCTAACTTAGAAAGCTCTGCTGAGGACGCAAAATATGGTGGTATTAATGGAAATTTAGATTCTGATTCACCTTGCCCTCAAAAGAGAATGAGAACTGAAGAAAATTCTGGCCTTGATGCTGCAGAAAATGAAGGTGTGTGCGCTGCTGACGATAACATTGAAAAAAGCTGCATACAAGCTGAACTTGCTGCAGTAACTGATTTCATTCCCCCTGAAACTGATCGAAGCATGAAGTTACACCCACGAGAAAAGAAGCTCATTGATTTTAGAGATAAGTTGTATCTTGCGCCCTTGACCACTGTGGGGAATCTACCATTCAGGAGGGTTTGCAAAGTATTAGGAGCTGATGTGACATGTGGGGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCATCAGAATGGGCATTGCTGAGACGTCATTTATCTGAAGATCTATTTGGCGTGCAAATCTGTGGGGCATATCCAGATACCATTGCACGAACTGTAGAACTGATAGAGAAGGAATGTACAATAGATTTTGTTGATATAAATATGGGTTGCCCAATCGATATTGTTGTGAATAAGGGTGCTGGATCAGCTCTTCTTACAAAACCAATGCGGATGAAAAGTATTGTAGAGGTAGCTTCAGGCACAGTGGAGAAACCAATAACTATCAAGGTGCGAACAGCTTATTTTGAAGGGAAAAATCGTGTCGATTCTATTATTGCGGACATGGGCTCTTGGGGAACTAATGCAGTAACGATACATGGTAGATCACGTCAGCAACGATACAGCAAGCTTGCTGACTGGGACTATGTCTACCAATGTGCCAGGAAGGCCCCTAGTACTTTGCAAGTAGTGGGAAATGGTGATATTTTTTCATTTGTTGACTGGAACAAGCAAAAGGCTGAATGCTCTGAGCTTGCTACATGCATGATTGCCCGTGGAGCACTGATTAAGCCTTGGATATTTACAGAAATCAAGGAACAAAGGCACTGGGACATTAGTTCTGGGGAGCGATTTAATATTTTGAAAGATTTTGTACATTTTGGCCTTGAGCACTGGGGTTCTGACACAAAAGGAGTGGAGACAACCAGACGGTTTTTATTGGAATGGCTTAGCTACACATGTAGATATATACCTGTTGACCTATTAGATGTTATTCCACAAAGATTAAACTGGCGTCCTCCATCTTACTACGGACGTGATGACCTTGAGACACTAATGGCTTCAGACTCTGCAGCTGACTGGATACGAATATCAGAGATGTTACTTGGCAAGGTTCCAGATGGCTTTTCATTTACGCCAAAGCATAAATCAAATGCTTACGACATTGCTCAGAATGGCTGA 2094 0.4327 MDESVTVTKTVPGSEVLKGEQPSSNSNVLTQQTPEQLVARAIAPVKVEFLRPPPVRTSSTTQNKDVSEDKDKASVQSGGLVKEKKSKRQLKRERRQEQKSAKNICPEIAKTGDISSCPYKDKCRFSHDLEAFKAQKPTDLEGECPFFKAEGSCPYGLACRFSSTHTEGMPSENLNDRRTTSEINGLSKDVQKLLWKNKMRFSKADANLKALGLWESSKLKRNNLEDKEGGNVDSNDCHNADNNGSCEVTNALGSNLESSAEDAKYGGINGNLDSDSPCPQKRMRTEENSGLDAAENEGVCAADDNIEKSCIQAELAAVTDFIPPETDRSMKLHPREKKLIDFRDKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHLSEDLFGVQICGAYPDTIARTVELIEKECTIDFVDINMGCPIDIVVNKGAGSALLTKPMRMKSIVEVASGTVEKPITIKVRTAYFEGKNRVDSIIADMGSWGTNAVTIHGRSRQQRYSKLADWDYVYQCARKAPSTLQVVGNGDIFSFVDWNKQKAECSELATCMIARGALIKPWIFTEIKEQRHWDISSGERFNILKDFVHFGLEHWGSDTKGVETTRRFLLEWLSYTCRYIPVDLLDVIPQRLNWRPPSYYGRDDLETLMASDSAADWIRISEMLLGKVPDGFSFTPKHKSNAYDIAQNG 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0094 697 MobiDBLite consensus disorder prediction 269 290 - -
Lele48g0094 697 MobiDBLite consensus disorder prediction 1 104 - -
Lele48g0094 697 MobiDBLite consensus disorder prediction 63 86 - -
Lele48g0094 697 SMART c3hfinal6 100 129 IPR000571 GO:0046872
Lele48g0094 697 SMART c3hfinal6 140 167 IPR000571 GO:0046872
Lele48g0094 697 MobiDBLite consensus disorder prediction 1 37 - -
Lele48g0094 697 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 95 175 - -
Lele48g0094 697 Gene3D - 94 179 - -
Lele48g0094 697 ProSitePatterns Uncharacterized protein family UPF0034 signature. 429 447 IPR018517 GO:0008033|GO:0017150|GO:0050660
Lele48g0094 697 CDD DUS_like_FMN 345 580 IPR035587 -
Lele48g0094 697 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 341 583 - -
Lele48g0094 697 Pfam Dihydrouridine synthase (Dus) 348 582 IPR035587 -
Lele48g0094 697 SUPERFAMILY FMN-linked oxidoreductases 345 658 - -
Lele48g0094 697 ProSiteProfiles Zinc finger C3H1-type profile. 99 130 IPR000571 GO:0046872
Lele48g0094 697 ProSiteProfiles Zinc finger C3H1-type profile. 143 168 IPR000571 GO:0046872
Lele48g0094 697 Coils Coil 80 100 - -
Lele48g0094 697 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 32 691 - -
Lele48g0094 697 Gene3D Aldolase class I 341 583 IPR013785 -
Lele48g0094 697 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 143 162 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0094 Lele-ChrLele48 1354650 1359274 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele48g0094 Dus 2.3e-48 CL0036