Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0092 ATGCTTCTCCGGTGGCGCAAGAAGGCGGGCATGACTGCCGCTCGAACACCGTCCGATGTACCGGCCGGTCATGTGGCCGTCTGTGTGGGACCCAGCTGCCGAAGGTTTATCGTTCGAGCGACATACTTGAACCACCCGGTCTTCAACAAGCTTCTGGCTCAAGCCGAAGAGGAGTATGGGTTCTGCAATCAAGGTCCCTTGACGATCCCTTGCGACGAGTCCATGTTCGAGGAGGTCCTACGGGTTGTGTCCCGGTCAGAGTCGGGTCGCTCGTTCCGCTTTTTGAACCTCGAAGATCTCCAGAGTCGCTGCCACGTGGACTTGGCGGGAGAATCGTGGCCGTTGCTTCATGAGGAGGCCATCTGTTGA 369 0.5827 MLLRWRKKAGMTAARTPSDVPAGHVAVCVGPSCRRFIVRATYLNHPVFNKLLAQAEEEYGFCNQGPLTIPCDESMFEEVLRVVSRSESGRSFRFLNLEDLQSRCHVDLAGESWPLLHEEAIC 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0092 122 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 13 80 IPR003676 GO:0009733
Lele48g0092 122 Pfam Auxin responsive protein 14 82 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0092 Lele-ChrLele48 1340660 1341028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0092 1 122 Calmodulin-binding Proteins AT4G34750 51.852 1.57e-38 125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1322 45 22983792 22984731 Lele48g0092 48 1340660 1341028 hybridization
Lele46g1421 46 21023563 21023994 Lele48g0092 48 1340660 1341028 hybridization