Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0075 ATGGTAAACCCTAAAGTATTTTTCGATATGACTATCGGCGGTCAACCTGCTGGCCGCATCGTCATGGAGCTTTACGCCGACACCACCCCCAGGACCGCCGAGAACTTCCGTGCTCTCTGCACCGGCGAGAAGGGAGTCGGTCGCAGCGGCAAGCCACTTCACTACAAGGGCTCCTCCTTCCACCGTGTGATTCCCGGCTTCATGTGCCAGGGAGGTGATTTCACCGCTGGAAATGGCACCGGTGGCGAGTCCATTTACGGCGCCAAGTTCGCTGACGAGAACTTTGTCAAGAAGCACACCGGTCCTGGTATCCTTTCCATGGCCAATGCTGGCCCTGGAACCAACGGATCTCAGTTCTTCGTCTGCACAGCCAAGACTGAGTGGCTCGACGGCAAGCACGTGGTGTTCGGCCAAGTCGTGGAGGGAATGAATGTGGTGAAGGAGGTCGAGAAGGTCGGATCTAGCTCTGGTAGGACCTCCAGGCCGGTGGTGATAGCTGACTGTGGGCAACTCTCTTAG 519 0.5723 MVNPKVFFDMTIGGQPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMNVVKEVEKVGSSSGRTSRPVVIADCGQLS 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0075 172 FunFam Peptidyl-prolyl cis-trans isomerase 1 172 - -
Lele48g0075 172 CDD cyclophilin_ABH_like 4 169 - -
Lele48g0075 172 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 170 IPR002130 GO:0000413|GO:0003755
Lele48g0075 172 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 7 169 IPR002130 GO:0000413|GO:0003755
Lele48g0075 172 PIRSF Peptidylpro_ismrse 1 172 IPR024936 GO:0003755
Lele48g0075 172 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 55 72 IPR020892 GO:0003755|GO:0006457
Lele48g0075 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 131 146 IPR002130 GO:0000413|GO:0003755
Lele48g0075 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 103 118 IPR002130 GO:0000413|GO:0003755
Lele48g0075 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Lele48g0075 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 130 IPR002130 GO:0000413|GO:0003755
Lele48g0075 172 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 60 72 IPR002130 GO:0000413|GO:0003755
Lele48g0075 172 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 171 - -
Lele48g0075 172 SUPERFAMILY Cyclophilin-like 1 171 IPR029000 -
Lele48g0075 172 Gene3D - 1 172 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0075 Lele-ChrLele48 1200290 1200808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0075 18 152 U-box Gene Family AT5G67530 48.529 1.79e-29 111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1345 45 23101486 23102004 Lele48g0075 48 1200290 1200808 hybridization
Lele46g1437 46 21178225 21178743 Lele48g0075 48 1200290 1200808 hybridization