Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0043 ATGTCGAAGGAAGTGAGCGAAGAAGGCCAAACCCACCACCATGGCAAAGACTACGTCGACCCCCCACCGGCTCCTCTTATTGACATGGCCGAACTCAAGCTCTGGTCCTTCTACAGGGCCCTCATCGCCGAGTTCATCGCCACCCTCCTCTTCCTTTACATCACCGTCGCCACCGTCATCGGCCACAAAAAGCAGAGCGGCCCCTGCGATGGTGTGGGCCTCCTCGGCGTCGCCTGGGCCTTCGGTGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGTATCTCTGGTGGCCACATCAATCCTGCTGTCACATTTGGGTTGTTCTTGGCGAGGAAGGTGTCACTCATCCGAGCTTTGGCATACATGGTGGCTCAGTGCCTGGGTGCGATTTGCGGTACTGGGTTGGTGAAGGCGTTCATGAAGCACTCGTACAACTCACTCGGTGGTGGGGCTAACGAAGTGAACTCCGGCTACAGCAAAGGCACTGCTCTCGGCGCCGAGATTATCGGCACCTTTGTTCTGGTCTACACCGTCTTCTCTGCCACCGACCCCAAGAGAAGCGCCCGTGACTCTCATGTTCCTGTTTTGGCTCCATTGCCAATTGGATTTGCTGTTTTCATGGTTCACTTGGCTACCATCCCCATCACTGGCACAGGGATAAACCCCGCAAGGAGCTTGGGTGCTGCTGTCATCTACAACAACGACAAAGCTTGGGACGACCACTGGATCTTCTGGGTTGGTCCTTTTGTGGGAGCATTGGCGGCGGCGGCGTATCATCAGTATATTCTGAGAGCAGCGGCCATTAAGGCATTGGGATCATTCAGAAGCAACACCAGCAACTAA 846 0.5579 MSKEVSEEGQTHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFIATLLFLYITVATVIGHKKQSGPCDGVGLLGVAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRALAYMVAQCLGAICGTGLVKAFMKHSYNSLGGGANEVNSGYSKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNTSN 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0043 281 SUPERFAMILY Aquaporin-like 30 265 IPR023271 -
Lele48g0043 281 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 270 IPR034294 -
Lele48g0043 281 PRINTS Major intrinsic protein family signature 167 185 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele48g0043 281 PRINTS Major intrinsic protein family signature 118 137 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele48g0043 281 PRINTS Major intrinsic protein family signature 243 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele48g0043 281 PRINTS Major intrinsic protein family signature 81 105 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele48g0043 281 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele48g0043 281 PRINTS Major intrinsic protein family signature 203 225 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele48g0043 281 Pfam Major intrinsic protein 32 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele48g0043 281 Gene3D Glycerol uptake facilitator protein. 24 281 IPR023271 -
Lele48g0043 281 CDD MIP 39 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele48g0043 281 ProSitePatterns MIP family signature. 99 107 IPR022357 -
Lele48g0043 281 FunFam Probable aquaporin PIP1-2 24 279 - -
Lele48g0043 281 TIGRFAM MIP: MIP family channel proteins 43 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0043 Lele-ChrLele48 1020439 1021545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0043 1 281 Major Intrinsic Protein MIP AT4G35100 90.391 0.0 525