Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0040 ATGAACACCGTCACGAAAAACCTTTCTGAGCAACTGGGCCCCCTTGTGGGTTTGAATGGCTGGGATTACTGTGTTCACTGGAAATTAAGCAAAGACCGAAGGTCTCTTTTCTGGACGGGATGCTCTTGTTCTGGAACTGAAAGTACAAAAAATGGTGGAGACAAGCTTGTTTTCCGTGTTTCTTCAGTTGCTCCATGCAGAGATACCATGTTTCGTCACCCCAGAACAGAGTCCTGTGCTCTACTTTCTCAAGTTCCCGTTTTCATAACCTTAGATTCTGGGATTCATGCAGAGACACTATCATCCAACGAATCCAAATGGTTAAATCATACCAATAGCTTAGATTCAAATACTTCTGAAGTTTTGATTCTGGTGGCCGGTGGACTAGTTGAGCTGTTTGCAACAAAGCAAGTGATCGATTTCGTCACATGCCGCTGCAAATTAGCAGTGGAGAGGACTAAATCGAAGAACCTTGAAGCAGAGTATAAGAGGAGGGAGAGGCTCACTAAGAAATTGTTCAGTCTACGGTCTTTAGTTCCCATAGTTTCTGAGAGAGAAAGAGCGTCGATTATTGGGGACACAATTGAGTACGTGAAGGATTTGCAGAAGCAAGTGAGAGAGCTGCAAGAGGAGCTCTTGCAGCTGGAGAAAAATTCAGAAGTGGATGAACATGAAGCACCCGATAATATTGTTGGGGTTGAAATGGGACCAGTAAAAGCCGATCAAGTGGAAGTGGCAGATATAGAAGGGAATGAGTTGTATGTGAAGGTGTTGTGTGATCACCGACGTGGTGGGTTTGTGAAACTGATGGAGGCATTCCACTCTCTGGGCCTCCACGTCATCAGTGCCAACGTTGTCACTAGCCACCATGGCCTTGTTTCCAATGTTTTCAAACTTCAGAAGGAGGAGATGAATGAAATAGTAAGAGCTGAAGAGGTAAGGAAGTTACTGGTGCAAGTTATGAGGAAGCCATGTAGAGGGAGGAGTTCAGCTGATATGAACATCATCACGCAAAGCTTGTCCGAGAGACTGAGGCCCCTTGTGGGTTTGAATGGCTGGGATTACTGTGTTCATTGGAAACTAAGCCAAGACCAAAGGTTTCTTGAATGGATGGGATGCACTTGTGCTGGGACTGAAGGTAGCCAAAATGGTGGAGAAGAACTTCTTTTCCCTATTTCTTCAGCTGCTCCATGCAGAGATACTATGTTTCCTCATCCCACAACAAAGTCCTGTGATTTACTTTCCCTTCTTCCCACTTCCATAACCTTAGATTCTGGGATTCATGCAGAGACCCTGTTATCCAATCAACCCAATTGGGTCAACTATTCCAATAGCTTAGACCCAAATACTTCGGAAGAAACAATTGGGACCCATGTTTTTATTCCTGTGCCTGGGGGACTGGTTGAGCTGTTTGTGACAAAGCAAGTGACGGAAGATCAACAGGTTGTCGATTTCATCACAGCCCACGTCAATATGGATATGAGCTTCGACATTGAAGTGAATTCAATCAGTCATATGCAACCAATCATGAATCCACTTTTAGGGGATGAGAATGATGGGAATACAATAGCGTCAGAGACTTCAAGTCTTCCCCCACATGATCAATGTAATTCGCCATTGAACTTGATGCAGCAGTATAGCTACAGAATGAAAAGTGACGGCATTTTTGAAGATGCCCAAGGTTCATTCCTATTGAACAAAAGCCAGCAATTTGGGGAGCCTATTGAGAAGAAGGAGCAGCAAGGGGACGATAAGGATTTGATCAAACACTTGGTGGGCAGGTCAGATTCGATGTCGGATTGCAGCGATCTGAACGAAGACGAGGATGATGGCAAGTATAGGCGAAGGAACGGGAAAGGGAATCAATCGAAGAACCTTCTGGCAGAGAGAAGGAGGAGGAAGAAGCTGAATGACAGCTTGTATAATCTTCGGTCTTTGGTTCCCAGAATTTCCAAGCTAGACAGAGCGTCGATTCTCGGGGACGCAATTGAGTACGTGAAGGATTTGCAGAAGCAAGTTAAAGATCTGCAAGATGAGCTCGAGGAACATTCAGAAATGGATGAACAAGAAGCACCAGATGATGTGGTTGGCGTTGAAATGGGACCAAACTCCGATCAAAGGAAGACTCAGAACGGGTTTCATGTGGAGAAATCAGGGAACGGCTTTATCTGGAAGCAAAAACAAGAGCTTGATGCTCCAAACGATAAGCAAACACAACATATGGAGCCGCAAGTGGAAGTGGCGGTGATAGAAGGGAATGAGTTGTATGTGAAGGTGTTCTGTGAGCACAGACCTGGAGGGTTCGTGAAACTGATGGAAGCATTCTACGCTCTGGGGTTCGAAGTCATGCATGCAACGGTGACCAGCCACAAAGGCCTCGTCTCCAATGTTTTCAAAGTGGAGAAGAAAGAAGATGAAATGGTGAAAGCTGAAGAGGTAAGAGAGTCATTGATGGAACTTATGAGGAACCCATGTAGAGGTTGGAATCATGAGATGAGCACAAGTGTGGCAAGGGAGTATCATCAGCAAGAACAAGAACAACTTCACCTTCATAACCACCACATGGCTGCTTATGCTTGTAATAACCCCCACCATTTACACCACATTCATAAATGGAAACATAATTTCCTCGGAGGGGAAGCAAATGGAAGCTAA 2655 0.4493 MNTVTKNLSEQLGPLVGLNGWDYCVHWKLSKDRRSLFWTGCSCSGTESTKNGGDKLVFRVSSVAPCRDTMFRHPRTESCALLSQVPVFITLDSGIHAETLSSNESKWLNHTNSLDSNTSEVLILVAGGLVELFATKQVIDFVTCRCKLAVERTKSKNLEAEYKRRERLTKKLFSLRSLVPIVSERERASIIGDTIEYVKDLQKQVRELQEELLQLEKNSEVDEHEAPDNIVGVEMGPVKADQVEVADIEGNELYVKVLCDHRRGGFVKLMEAFHSLGLHVISANVVTSHHGLVSNVFKLQKEEMNEIVRAEEVRKLLVQVMRKPCRGRSSADMNIITQSLSERLRPLVGLNGWDYCVHWKLSQDQRFLEWMGCTCAGTEGSQNGGEELLFPISSAAPCRDTMFPHPTTKSCDLLSLLPTSITLDSGIHAETLLSNQPNWVNYSNSLDPNTSEETIGTHVFIPVPGGLVELFVTKQVTEDQQVVDFITAHVNMDMSFDIEVNSISHMQPIMNPLLGDENDGNTIASETSSLPPHDQCNSPLNLMQQYSYRMKSDGIFEDAQGSFLLNKSQQFGEPIEKKEQQGDDKDLIKHLVGRSDSMSDCSDLNEDEDDGKYRRRNGKGNQSKNLLAERRRRKKLNDSLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQVKDLQDELEEHSEMDEQEAPDDVVGVEMGPNSDQRKTQNGFHVEKSGNGFIWKQKQELDAPNDKQTQHMEPQVEVAVIEGNELYVKVFCEHRPGGFVKLMEAFYALGFEVMHATVTSHKGLVSNVFKVEKKEDEMVKAEEVRESLMELMRNPCRGWNHEMSTSVAREYHQQEQEQLHLHNHHMAAYACNNPHHLHHIHKWKHNFLGGEANGS 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0040 884 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 620 669 IPR011598 GO:0046983
Lele48g0040 884 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 217 IPR036638 GO:0046983
Lele48g0040 884 Coils Coil 800 823 - -
Lele48g0040 884 CDD ACT_UUR-ACR-like 757 821 - -
Lele48g0040 884 SUPERFAMILY ACT-like 754 821 IPR045865 -
Lele48g0040 884 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
Lele48g0040 884 CDD bHLH_AtAMS_like 623 692 - -
Lele48g0040 884 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 474 820 - -
Lele48g0040 884 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 8 139 IPR025610 -
Lele48g0040 884 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 340 487 IPR025610 -
Lele48g0040 884 Coils Coil 659 689 - -
Lele48g0040 884 MobiDBLite consensus disorder prediction 679 713 - -
Lele48g0040 884 Gene3D - 148 219 IPR036638 GO:0046983
Lele48g0040 884 Gene3D - 610 685 IPR036638 GO:0046983
Lele48g0040 884 ProSiteProfiles ACT domain profile. 254 330 IPR002912 -
Lele48g0040 884 MobiDBLite consensus disorder prediction 596 627 - -
Lele48g0040 884 SMART finulus 158 207 IPR011598 GO:0046983
Lele48g0040 884 SMART finulus 626 675 IPR011598 GO:0046983
Lele48g0040 884 Coils Coil 191 225 - -
Lele48g0040 884 MobiDBLite consensus disorder prediction 518 538 - -
Lele48g0040 884 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 619 685 IPR036638 GO:0046983
Lele48g0040 884 MobiDBLite consensus disorder prediction 515 538 - -
Lele48g0040 884 Pfam Helix-loop-helix DNA-binding domain 156 202 IPR011598 GO:0046983
Lele48g0040 884 Pfam Helix-loop-helix DNA-binding domain 627 670 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0040 Lele-ChrLele48 992449 999157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0040 338 849 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 47.156 3.79e-138 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele48g0040 bHLH-MYC_N 1.4e-20 CL0161