Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0035 ATGCTTGCTTGCGGAAGTATCGCATTTCCACTGTGCTTACCAAACGCTAGGAGGAACCCAAGACTGTTTCGTTGCGTAGCTGAACCTCTACAAGGCTATTCCAATGAAGGACATAGTGGCAAAAAGAAAGTGGTAATCGTCGGCTCTGGCTGGGCTGGCCTTGGAGCGGCTCATCACCTTTGCAATCAGGGTTTCGACGTCACTGTTCTTGAAGGCGACAAGGATTTTGGATATCCGGACACTACAACAATCCGGGGTTATTATCGAGCCTTTCAAAACATATTTAGCCTTGTTGATGAGTTGGACATTAAGCCCTTCACAAATTGGACAAAATCAGCACAATATTCTGAAGAGGGACTGGAGATAGAGTTTCCAATATTTCAAGATTTGCCTCGATTGCCTACTCCGTTGGGAACCTTATACTACAGCCAATTCTTTCGGCTTCCTTTGTTGGATAGGTTGACATTTCTACCCTTAATGGCTGCAGTGATTGACTTTGACAACACCGACACAGCCTGGAGGAAATATGATTCAATTACTGCAAGGGAGCTTTTCAAACGGTTTGGCTGCTCAGAAAGGCTTTATAGGGATATACTAGGCCCGTTGGTTCATGTGGGTCTTTTTGCTCCGGCAGAGCAATGTAGTGCTGCCGCAACACTAGGACTGCTAAATTTTATTACCCTTGCCCACCAGAAAGATTTTGATATGGCATGGCCTCGTGGAGCTGTAAAAGGAAAAATTTTTGAGCCGTGGATGGTTTCCCTAAGAGCTAAGGGCTGTAAATTTGTGGAAGATAGGAGAGTGACAGATTTAATCTTCAATGAGGAAACAGGTTGTGTTTCAGAGGTAGTTTGTGGCAAGACGACCTACAAAGCTGATGCAGTGATTATGGCAGTGGCAATTTCTACTCTACAAGAGATTATACAGAACAGCCCAACATTATGTTCAAGGGAGGACTTTCTGAAGGTTCTGAACTTGGGAAGCATTGATGTTCTCACTGTTAAACTGTGGCTTGACCTGAAGGTGAAGATTCCAGCTGCTAGCAATGCCTGCTCTGGGTTTGACAACTCATTTGCGTGGACATTCTTTGACTTGAATGTCATTCAAGACGAACATCAAAGTGATTCTATGACAGTTTTGCAAGCTGACTTTTATTATGCAAATGAGTTGTTACCGCTGAAGGATGAGCACATGGTTGTGAAATTGAAGTCTTACCTCTCCAAGTACATCAAAGAGTTTGAGAATGCTAGCGTGGTTGATAAGGAGATTAGTAGATATCCCAGATTGTTGACCCACTTCTTCCCAGGTTCATACAAAAACGCGATGCGTGCGTCCACATCTTTCCCAAACGTGTTCATGGCAGGTGATTGGATTGTGAACCGACACGGCTCATGGGCACAGGAAAAATCTTATGTGACGGGTCTAGAAGCTGCGAATCGAGTGGTGGATTATCTCGAAGAGGGAAGCTTTGCTAGGATTCTACCTGTAGAAGCAGCTGAACCACATATTCAGACTCTTCGTGACGCCAATAAAAGCCTCAACGATCTCAGGGCCCAGCTTTCCTTGTCCATTACCCAATTATTGCCTCACTCTAGAGTTGCAGAACTGATCCTTTTCTTCTGCTGGCCACTGAAATCAAACTTCAAACTCAACCAGAGATTCCCATTCTCAGAAGCCATGGCTCGTTCGTTATTGAGGTTCATCTTTAGATCTCAGTTCCGTCCCTACTCTCTGTCAATCTCTCTCTTACGCTTCAGATCAGAGGAAAAAGAGAAGAGTTCAAACATGGGTGTGGCTCAAAACAATCTTGATTTGGAGGAGGGAACTTTGGAGATAGGAATGGAATACAGAACTGTATCTGGTGTTGCTGGACCATTAGTCATTCTTGACAAAGTTAAGGGACCCAAATATCAAGAGATTGTTAATATTCGTTTAGGAGATGGAACTACTCGACGGGGACAAGTTCTAGAAGTGGATGGTGAAAAGGCTGTTGTTCAGGTTTTTGAAGGTACATCTGGTATTGACAATAAATTTACAACTGTGCAGTTTACTGGAGAGGTGTTGAAAACTCCTGTCTCACTGGACATGCTTGGGCGCATATTTAATGGTTCTGGAAAACCTATTGATAATGGTCCACCCATATTGCCTGAGGCTTACTTGGATATATCAGGGAGTTCTATCAACCCTAGTGAGAGAACCTATCCAGAGGAGATGATACAGACAGGAATATCTACAATTGATGTCATGAATTCCATTGCTAGAGGTCAAAAGATCCCTCTTTTCTCAGCTGCTGGTCTTCCCCATAATGAAATTGCTGCTCAGATATGTCGCCAGGCTGGCTTAGTCAAGCGATTGGAGAAGACTGATGATCTTCTTGAGGGCGGGGAAGAAGACAATTTTGCCATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAATTTTTTAAACGTGACTTTGAGGAGAATGGCTCAATGGAGAGGGTGACTCTGTTTCTTAATCTGGCAAATGATCCAACAATTGAGCGCATTATCACTCCTCGTATTGCTCTAACAACTGCTGAATATTTGGCTTATGAATGCGGGAAGCATGTTCTTGTGATACTTACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCTCGGGAAGAAGTGCCTGGAAGGCGTGGTTATCCGGGTTACATGTATACAGATCTTGCAACAATCTACGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTTACCATGCCAAATGATGATATCACACATCCCACTCCTGATCTTACGGGATACATTACTGAGGGACAGATATACATAGATAGGCAGCTGTATAACAGACAGATATACCCACCAATCAATGTTCTTCCATCACTGTCTCGGTTGATGAAGAGTGCCATTGGTGAGGGAATGACTCGAAGGGATCATTCTGATGTTTCGAACCAGCTCTACGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCATCTGAGGATTTGCTGTATCTGGAATTTTTGGACAAGTTCGAGAGGAAGTTTGTTACCCAGGGAGCTTATGACACCCGCAACATCTTCCAGTCACTAGATCTTGCATGGACTTTGCTTCGGATCTTCCCCCGTGAGCTGCTTCATCGGATACCAGCAAAGACTCTTGACCAATATTATAGCCGAGACGCTGCTAGGCTTCTGAGCTTTGAGAAAACAGAAACAGGGCAAAGAAAGAAAGAGCGACTCATCGGTCATCACGAGTCGACCCTTGTGATTTGCGAGAAAATGGACGCCGGCATTGACCACTATCTGGTTCTTGGATTACCGTCCGGTGAGGAAGGGGCTAAGATTACAGAGAAAGAGATCTCGAAGGCTTACAAATTGAAGGCTTTGGAATTGCACCCGGACAAGAGACCAGATGATCCAAATGCCCATTCCAACTTCCAAAAGCTCAAGAATTCATATGAGATTCTCAAGGATGAAAAGGCTAGAAAATTGTTCGATGACCTGCTGCGGGTTAAGCGTGAGCAGCAACGCCGACTTTCAGAGCGCGATGGCAAGCGTCGGAAGATGGTTTCTGATCTCGAAGAAAGGGAGCGGGCTGCTTTTGCTACTGATCCATCTGTTAAAGAGCGAGAAGAAGAGGAGAGGATTGCTAGGCAGCTGAAGGAAGAGATTGCTAGGATTCGGGCTATGCACGCCAATAAAGAAGTTCCCACCGAGCCTGATTTGAAGAAGAAGTGTATGGGAGTTGGGAAGAAGAAGTCTATGGGAGTTGGGAAAGAAAGCATGGCTTCTGGTGGCTCTGGGTTGGATAAAGAAAAGGTCCTCAAAGTTTCGTGGGAGAAGGGAGGTGAAGATTATACGGCAGAAAAGTTGAGAGAACTGTTTTCCAGGTTTGGTGAAGTGGAAGATGTAGTCATCAAGGGCAGTAAGAAGAAGGGTTCTGCACTTGTTGTAATGGCTACAAAGGAAGGAGCTGTTTCTGCCACAGGAAGTGTTAGTGGGCATCTTTCTAATCCGCTGCTGGTTTTACCTCTTCAGCCTGCTGTGGCAACACAGTTTTCAAGTACCGATAAACCCGTGCAACCCGATAAGATAAATAACCTGGTTGGTGCTGGGTATCAAGCTTTTGAGAATTCTGTTTTGGAGAAGCTGCAGAAGGCTGCACAGAAGAATAAGTGA 4239 0.4466 MLACGSIAFPLCLPNARRNPRLFRCVAEPLQGYSNEGHSGKKKVVIVGSGWAGLGAAHHLCNQGFDVTVLEGDKDFGYPDTTTIRGYYRAFQNIFSLVDELDIKPFTNWTKSAQYSEEGLEIEFPIFQDLPRLPTPLGTLYYSQFFRLPLLDRLTFLPLMAAVIDFDNTDTAWRKYDSITARELFKRFGCSERLYRDILGPLVHVGLFAPAEQCSAAATLGLLNFITLAHQKDFDMAWPRGAVKGKIFEPWMVSLRAKGCKFVEDRRVTDLIFNEETGCVSEVVCGKTTYKADAVIMAVAISTLQEIIQNSPTLCSREDFLKVLNLGSIDVLTVKLWLDLKVKIPAASNACSGFDNSFAWTFFDLNVIQDEHQSDSMTVLQADFYYANELLPLKDEHMVVKLKSYLSKYIKEFENASVVDKEISRYPRLLTHFFPGSYKNAMRASTSFPNVFMAGDWIVNRHGSWAQEKSYVTGLEAANRVVDYLEEGSFARILPVEAAEPHIQTLRDANKSLNDLRAQLSLSITQLLPHSRVAELILFFCWPLKSNFKLNQRFPFSEAMARSLLRFIFRSQFRPYSLSISLLRFRSEEKEKSSNMGVAQNNLDLEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDDLLEGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDAARLLSFEKTETGQRKKERLIGHHESTLVICEKMDAGIDHYLVLGLPSGEEGAKITEKEISKAYKLKALELHPDKRPDDPNAHSNFQKLKNSYEILKDEKARKLFDDLLRVKREQQRRLSERDGKRRKMVSDLEERERAAFATDPSVKEREEEERIARQLKEEIARIRAMHANKEVPTEPDLKKKCMGVGKKKSMGVGKESMASGGSGLDKEKVLKVSWEKGGEDYTAEKLRELFSRFGEVEDVVIKGSKKKGSALVVMATKEGAVSATGSVSGHLSNPLLVLPLQPAVATQFSSTDKPVQPDKINNLVGAGYQAFENSVLEKLQKAAQKNK 1412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0035 1412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 689 978 IPR027417 -
Lele48g0035 1412 Pfam NAD(P)-binding Rossmann-like domain 46 77 - -
Lele48g0035 1412 Pfam Flavin containing amine oxidoreductase 253 481 IPR002937 GO:0016491
Lele48g0035 1412 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 600 1082 IPR022879 -
Lele48g0035 1412 TIGRFAM V-ATPase_V1_B: V-type ATPase, B subunit 615 1082 IPR005723 GO:0033180|GO:0046961|GO:1902600
Lele48g0035 1412 Gene3D - 38 337 IPR036188 -
Lele48g0035 1412 CDD DnaJ 1119 1178 IPR001623 -
Lele48g0035 1412 SUPERFAMILY RNA-binding domain, RBD 1305 1355 IPR035979 GO:0003676
Lele48g0035 1412 SUPERFAMILY FAD/NAD(P)-binding domain 41 485 IPR036188 -
Lele48g0035 1412 MobiDBLite consensus disorder prediction 1195 1232 - -
Lele48g0035 1412 ProSitePatterns ATP synthase alpha and beta subunits signature. 963 972 IPR020003 GO:0005524
Lele48g0035 1412 Gene3D - 624 1083 - -
Lele48g0035 1412 Gene3D DnaJ domain 1110 1212 IPR036869 -
Lele48g0035 1412 Pfam ATP synthase alpha/beta family, beta-barrel domain 619 685 IPR004100 GO:0046034|GO:1902600
Lele48g0035 1412 FunFam V-type proton ATPase subunit B, brain 624 1084 - -
Lele48g0035 1412 Gene3D - 1284 1373 IPR012677 -
Lele48g0035 1412 Hamap V-type ATP synthase beta chain [atpB]. 613 1081 IPR022879 -
Lele48g0035 1412 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1293 1367 IPR000504 GO:0003723
Lele48g0035 1412 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1304 1354 IPR000504 GO:0003723
Lele48g0035 1412 MobiDBLite consensus disorder prediction 1255 1287 - -
Lele48g0035 1412 SUPERFAMILY Chaperone J-domain 1109 1185 IPR036869 -
Lele48g0035 1412 CDD V_A-ATPase_B 687 974 - -
Lele48g0035 1412 CDD ATP-synt_V_A-type_beta_C 982 1076 - -
Lele48g0035 1412 SMART dnaj_3 1118 1181 IPR001623 -
Lele48g0035 1412 CDD RRM_DNAJC17 1293 1365 IPR034254 -
Lele48g0035 1412 ProSitePatterns Nt-dnaJ domain signature. 1166 1185 IPR018253 -
Lele48g0035 1412 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 742 972 IPR000194 GO:0005524
Lele48g0035 1412 Coils Coil 1230 1250 - -
Lele48g0035 1412 ProSiteProfiles dnaJ domain profile. 1119 1189 IPR001623 -
Lele48g0035 1412 CDD ATP-synt_V_A-type_beta_N 615 686 - -
Lele48g0035 1412 Pfam DnaJ domain 1119 1186 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0035 Lele-ChrLele48 952817 970324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0035 594 1080 Primary Pumps ATPases(2) AT4G38510 96.715 0.0 971