Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0019 ATGGCTTTCTTCCTTGTCTTACTCTCCCTTCTTGTTCCCTCTGCTTCTGCTTGCGATCGTTGCATCATCCAGTCCATGGCTTCCTACTTCTCTAAATCCTCTGCTCTTTCCTCCGGGGCGTGCGGGTATGGCCCCTTGGCCATGGGATTGAGCGGCGGACACCTGGCAGCTGCGGTGCCTTCTCTCTACAAAGATGGCGCCGGCTGTGGTGCCTGCTTTCAGATGAGATGCAAGAACCCGAGTATGTGCACAAAAGAAGGGACCACCGTGGTTGTCACCGATCTCAACAACAACGACAACAACAACCACACTGATTTCGTGGTCAGCAGCAGAGCCTTCGCGGCCATGGCTAATAAGGGCATGAGTCAGAAAATTTTTAAGCTTGGAATTGTTGACGTTGAATACAGGAGAGTACCATGCGTGTACAAAAACCGGAACTTGGCGGTGCGGGTGGAAGAATCGAGCAAGAAACCCAACTACTTGGCCATTAAATTCTTGTACCAGGGCGGTGAAACGGATATAGTGGGGGTGGATGTGGCTCAGGTGGGGTCTTCGAACTGGAGCTTCATGAGCAGGAAGAGTGGGGCAATATGGGCGACAGATAGGGTGCCAGCGGGGGAACTGCAGTTCCGGATGGTGGTGACGTCGGGGTATGACGGCAAATGGATATGGGCACCCAAGGTGCTGCCGGAGGGCTGGAAGAGCGGCGACATCTACGACTCCGGTGTTCAGATCACCGATGTTGCAAAACAGGCCTGTTCTCCCTGCGACGGTGGCTCTTGGTCATGA 789 0.5412 MAFFLVLLSLLVPSASACDRCIIQSMASYFSKSSALSSGACGYGPLAMGLSGGHLAAAVPSLYKDGAGCGACFQMRCKNPSMCTKEGTTVVVTDLNNNDNNNHTDFVVSSRAFAAMANKGMSQKIFKLGIVDVEYRRVPCVYKNRNLAVRVEESSKKPNYLAIKFLYQGGETDIVGVDVAQVGSSNWSFMSRKSGAIWATDRVPAGELQFRMVVTSGYDGKWIWAPKVLPEGWKSGDIYDSGVQITDVAKQACSPCDGGSWS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0019 262 Pfam Lytic transglycolase 57 135 IPR009009 -
Lele48g0019 262 Gene3D - 13 140 IPR036908 -
Lele48g0019 262 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Lele48g0019 262 PRINTS Expansin/Lol pI family signature 128 144 IPR007118 GO:0005576
Lele48g0019 262 PRINTS Expansin/Lol pI family signature 187 201 IPR007118 GO:0005576
Lele48g0019 262 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Lele48g0019 262 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576
Lele48g0019 262 Gene3D - 142 246 IPR036749 -
Lele48g0019 262 SUPERFAMILY Barwin-like endoglucanases 8 143 IPR036908 -
Lele48g0019 262 SMART dpbb_1 56 135 IPR007112 -
Lele48g0019 262 PRINTS Major pollen allergen Lol pI signature 77 87 IPR005795 GO:0005576|GO:0019953
Lele48g0019 262 PRINTS Major pollen allergen Lol pI signature 217 234 IPR005795 GO:0005576|GO:0019953
Lele48g0019 262 PRINTS Major pollen allergen Lol pI signature 57 68 IPR005795 GO:0005576|GO:0019953
Lele48g0019 262 PRINTS Major pollen allergen Lol pI signature 150 165 IPR005795 GO:0005576|GO:0019953
Lele48g0019 262 PRINTS Major pollen allergen Lol pI signature 166 181 IPR005795 GO:0005576|GO:0019953
Lele48g0019 262 PRINTS Major pollen allergen Lol pI signature 117 132 IPR005795 GO:0005576|GO:0019953
Lele48g0019 262 PANTHER EXPANSIN-B3 10 244 - -
Lele48g0019 262 Pfam Expansin C-terminal domain 148 230 IPR007117 -
Lele48g0019 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 241 IPR007117 -
Lele48g0019 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 38 145 IPR007112 -
Lele48g0019 262 SUPERFAMILY PHL pollen allergen 145 241 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0019 Lele-ChrLele48 864482 866609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0019 3 262 Expansin Gene Family AT3G45960 61.832 2.63e-109 314