Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0018 ATGGGCGATATCCAACTGCCGGGCTTCCGATTCCACCCCACCGAAGAAGAACTCCTTGATTTCTACCTTAAGAACATGGTCACCGGTACCCGCAACAAACTCTGCCTCGACATCATCCACTCCCTCAACATCTACCTCCACGATCCCTGGGATTTACCCTCCATGGCCAACGCTGGCGAGAGAGAGTGGTACTTCTTCGTCCCCCGAGATAAAAAGCACGGCGGCGCCGGCAGGCCCAACCGCACCACCCAGAAGGGCTTCTGGAAAGCCACCGGTTCCGACCGCAAGATCCTCAGCCCCTCCCACCCCAAGCGCCTCATCGGCCTCCGCAAGACCCTCGTCTTCTACCGCGGAAGAGCTCCCCGCGGCTCCAAGACCGATTGGGTCATGAACGAGTACCGCCTCCCCGACTCCTTCAACTTCCCCAACAAGGACGCCATAGTGTTGTGCAAGATATACCGAAAGGCTACATCATTGAAAGTGCTGGAGGAGAGGGCATTGCAGTGCGAGCCTCCCTCCTCCTCCGCGCCCACCTTCCAGCCCAAGACGGAACAAATGCAAGAAACGGTGGAGCCAGCGGCGGTGCCTCAGCTCAACCTGCCGGAGCTGCAATTACCCGTGAACACGGCCTGGACCCAAGACCCCTATTGCCCTCAATTAAACAGCCCTTGGCTCCAATGTTTCACTCCCCTCACCCTTGCCAACCTCTTAAATTGTTGA 720 0.5792 MGDIQLPGFRFHPTEEELLDFYLKNMVTGTRNKLCLDIIHSLNIYLHDPWDLPSMANAGEREWYFFVPRDKKHGGAGRPNRTTQKGFWKATGSDRKILSPSHPKRLIGLRKTLVFYRGRAPRGSKTDWVMNEYRLPDSFNFPNKDAIVLCKIYRKATSLKVLEERALQCEPPSSSAPTFQPKTEQMQETVEPAAVPQLNLPELQLPVNTAWTQDPYCPQLNSPWLQCFTPLTLANLLNC 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0018 239 SUPERFAMILY NAC domain 6 155 IPR036093 GO:0003677|GO:0006355
Lele48g0018 239 ProSiteProfiles NAC domain profile. 5 155 IPR003441 GO:0003677|GO:0006355
Lele48g0018 239 Pfam No apical meristem (NAM) protein 7 135 IPR003441 GO:0003677|GO:0006355
Lele48g0018 239 Gene3D NAC domain 14 159 IPR036093 GO:0003677|GO:0006355
Lele48g0018 239 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0018 Lele-ChrLele48 860212 861042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0018 3 232 NAC Transcription Factor Family AT2G17040 55.235 1.35e-90 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele48g0018 NAM 3.3e-34 No_clan