Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0008 ATGTCCAACTCTGACTCTGGTGCCGGTGCCTCTACTTCCACAACTCCAAGCGGCACCCGGAAACATCATTGTCGAAGCAAACGAAACAAACGTATCACCGTCATCGACCACACCGTGACTTTCAAACCCAAATACGCGGCCAAACAACCCCACCCTGAGGCGCCGACGATTACCCGGCCATGCACCGAGTGTGGGAAGAAGTTCTGGTCATGGAAGGCTCTCTTCGGCCACATGCGCTGTCATCCTGAACGTCAGTGGCGCGGCATCAACCCGCCCCACAATCTCCAACGACAACCTCCTCCGGCGAAGCAGAAGCCAGAGTTCATAACCCCAGAAGACCACGAAATCGCGGCCGGGCTTCTGTTGCTGGCGAACTCGGAGGGGGCGGGAGCGTCGCGGTTCGAGGGCTCGAGTTGCAAGAGGGTGTTCGTGTCACGGCAGGCTCTGGGAGGGCACAGGGCGAACCACAAGAATGTGAAGGGGTGTTTGGCGAACGAAGAAGATGATGAGATGGAAGGGCACAAGTGTGGGATATGCCAGAGGGTGTTTCCTAGTGGGCAGGCGCTGGGCGGGCACATGAGGTGTCACTGGGACAAAGGAGAGCCTGGTCATCATCAGGCATATGGCCTCGACCTCAATTTCCCTCCCCCTCTTCAACCTGACTCCCCCTCTCCCCTCACTCTCGATTTGAGATTGGGACTTTAA 705 0.5759 MSNSDSGAGASTSTTPSGTRKHHCRSKRNKRITVIDHTVTFKPKYAAKQPHPEAPTITRPCTECGKKFWSWKALFGHMRCHPERQWRGINPPHNLQRQPPPAKQKPEFITPEDHEIAAGLLLLANSEGAGASRFEGSSCKRVFVSRQALGGHRANHKNVKGCLANEEDDEMEGHKCGICQRVFPSGQALGGHMRCHWDKGEPGHHQAYGLDLNFPPPLQPDSPSPLTLDLRLGL 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0008 234 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
Lele48g0008 234 MobiDBLite consensus disorder prediction 1 19 - -
Lele48g0008 234 MobiDBLite consensus disorder prediction 1 30 - -
Lele48g0008 234 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Lele48g0008 234 Gene3D Classic Zinc Finger 132 196 - -
Lele48g0008 234 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 27 234 - -
Lele48g0008 234 SUPERFAMILY beta-beta-alpha zinc fingers 173 199 IPR036236 -
Lele48g0008 234 ProSitePatterns Zinc finger C2H2 type domain signature. 176 196 IPR013087 -
Lele48g0008 234 SUPERFAMILY beta-beta-alpha zinc fingers 60 156 IPR036236 -
Lele48g0008 234 SMART c2h2final6 134 156 IPR013087 -
Lele48g0008 234 SMART c2h2final6 174 196 IPR013087 -
Lele48g0008 234 SMART c2h2final6 59 81 IPR013087 -
Lele48g0008 234 Pfam C2H2-type zinc finger 60 83 - -
Lele48g0008 234 Pfam C2H2-type zinc finger 137 157 - -
Lele48g0008 234 Pfam C2H2-type zinc finger 174 199 - -
Lele48g0008 234 ProSiteProfiles Zinc finger C2H2 type domain profile. 174 201 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0008 Lele-ChrLele48 789485 790189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0008 47 234 C2H2 Transcription Factor Family AT4G35280 55.405 1.87e-70 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele48g0008 zf-C2H2_6 4.1e-11 CL0361