Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0007 ATGGAATATGGTGCCCTAGTACACAATAATTCTGCATTTGAGACCTTATCAGACAGTACTGCCTCGGTTTCAGAAGGAGATTTCATTGACGAGCTCTTTGCACATGGCTGCTGGCTGGAAACCACTGGAGGATCATACAACCTCACGCAGCCTTGTGCTACGAATCCCCCTTCTCTCAATGACCCCAATCTGCACTATTGGACATCCTCAGACCCAAATCACCAAATCTATCAACAAGAATCAGAGGTAAGTTTTCCATTCCAAACCGAAACTGAAGTGGGCAAAAGGTGGTGGATTGGACCAAAGGGAAATCTCGGCCCATCTTCCTCAGTCAAAGAAAGATTAGTGCTTGCCGTGGGGTACCTGAGAGAATACACCAAAAATACCAATGTGTTTCTTCAGATATGGGTGCCAATGACGAGAGAGGGAACGTACGTTCTAAACGGTGCTCACGATCACGCTCCCCCACAATCATCCGTTGATGATCCAAACTGTAAGACTCTAGAATATTACCGAAATGTTTCCAAAGGTTATCAGTTTGCCGCCGAGGAGGAATCGGAAGAGTGTCGAGTAATCCTAGGAAAATTGCCTGATCAGGGGATCCCTACTGTTCGGTTTTTCAAAAGCCACGAGTATGTTTCATATGGGAATTATGAAGAGAAACACTACGATTTGCGTGGGTCATTGGCCATTCCCGTGTTTGAGCGAGGCAGCGGTACATGCCTCGGCATTGTTGACATTCTAATGACCAATCACAACATCAACTATCACCCGCAAATTGACAATGTCTGCCATTCTCTCCAGACCGTTGATTTTAACAAGAGTACGACTTGCCAGAACCTTATTTCTCCAGCTGTGAAGGTATTTGACGAGTTGTACCTAGCTGCACTAAATGAGATTGTGGAGGTGTTGACGTCTGTGTGCAAGACCCATAATCTGCCTTTAGCTCTCACTTGGGCGCCCTGCGGCCAACAAGGTAAGGGCGGATGTCCCAACGACAATTTCGCGGCTTGTTTGTCCACCGTGGATTCTGCTTGTTTCGTGGCGGATCTAGACTTACTTGGCTTCCAAGAAGCCTGCTCTGAGCACCACCTCCTTAGAGGTCAAGGCATTGTTGGCACCGCCTTCACCACCACCAAGCCATGCTTTGCAACCGACATAACTGCCTTCAGCAAAACTGAGTATCCTCTGTCTCACCATGCCACCATGTTTGGGTTGCATGCCGCCGTCGCTATTCCCCTCCGCAGTGTCTACACCGGATCCGCTGATTTTTTGTTGGAATTTTTCTTACCCAAGAATTGCCATGACGGCGAAGAACAAAAGCAGATGCTGAATTTATTATGTATTGTGGTACAACAGGCTTGCCGGAGTCTACATGTTGCCATGGACAAACAAATGGAGGAAGAATTCACGTTTACAGTTGGGGATATGTTGGCCGCGGCTTCCAAAGGTGGAGCCCACAAAGAAGAAACTCTTGAGTTTGGGTCTTGTAATTTAGTAGAAGCGTCTTCAAAAGAATCGTCGTGGATTGCACATATGATGGAGGCTCAAACCCAACACAATGGTAAAGGAGTGTCGGTGTCGTTGGAATACCTGGAAGAACCAAAACAAGAGTTCCAAGTGACAACCAACTGGGAAGCTAGCCACGGGGGATTCTGCAATGGGCAGACATTTTCAGATTATGGACAAGTTCACCAGAGATCAGAAGCATCCAGAGCGAGCGCAGAGGGTGGAGGGGAATCTTACGCTTTTGGCGGACGCCGCTCGTCGGGTGGCAGAAAATCAGGCGAGAAGAGACGAACCAAGGCCGAGAAGAGTATCAGCTTGCCAATTCTTCGACAATACTTTGCGGGAAGCCTTAAAGATGCTGCCAAGAGCATCGGCGTGTGTCCCACGACTCTTAAAAGGATATGCAGACAACATGGAATTACCAGATGGCCTTCAAGGAAAATAAAGAAGGTAGGACACTCGTTAAGGAAACTTCAGTTTGTGATCGATTCAGTACAAGGTGCTGAGGGCGCCATTCAGATCGGTTCCTTCTACTCCAGTTTTCCAGAGTTGAGCTCCACAAATTTGTCTCAATCATCAAACATCAGCGACCATTCTCAGAAAGTACATGCTCGTCCCGAGCACGCTGGCTTATATGGCCACGGCGGCCCAACGTTAAAATCTCCACCCTCTTGTTGCAGCCAGACTTCCACCATCATCAACGATGTTTTAATGGCAGAAAACCCAGAAGCGTCGCTCAAGAGAGCTCATACTCACGTGGAAGCAGAGTTGCATGAGGATTCAAAACAGCAGAAAGCACTGGGCGAGCATCCTAGTGCGGAGGTTTTACCTCCGCTGCCTGAAAATAGTGGCGGTGCTGTTAGGGTGAAAGCTACTTTCGGGGATGAAAAGATTCGTTTTAGCTTGCAAGCAAAGTGGGGGTTTAGAGAACTACAACTGGAGATCGCCAGACGATTCAATCTAGAAGATCTGAGCAACGTCAGTCTCAAGTATTTGGATGAGGAGGGTGAGTGGGTTCTTTTAACATGCGACGCTGATCTTGATGAGTCTAAAGACACGTATCGATCATCAAAGAGCCGTACAATGAGGTTCGCCCTGTTTCAGGCTTCGCCACTAAATCTAGCCAACACTTTTGGCAGCAACAGCTCATCCTGA 2664 0.4775 MEYGALVHNNSAFETLSDSTASVSEGDFIDELFAHGCWLETTGGSYNLTQPCATNPPSLNDPNLHYWTSSDPNHQIYQQESEVSFPFQTETEVGKRWWIGPKGNLGPSSSVKERLVLAVGYLREYTKNTNVFLQIWVPMTREGTYVLNGAHDHAPPQSSVDDPNCKTLEYYRNVSKGYQFAAEEESEECRVILGKLPDQGIPTVRFFKSHEYVSYGNYEEKHYDLRGSLAIPVFERGSGTCLGIVDILMTNHNINYHPQIDNVCHSLQTVDFNKSTTCQNLISPAVKVFDELYLAALNEIVEVLTSVCKTHNLPLALTWAPCGQQGKGGCPNDNFAACLSTVDSACFVADLDLLGFQEACSEHHLLRGQGIVGTAFTTTKPCFATDITAFSKTEYPLSHHATMFGLHAAVAIPLRSVYTGSADFLLEFFLPKNCHDGEEQKQMLNLLCIVVQQACRSLHVAMDKQMEEEFTFTVGDMLAAASKGGAHKEETLEFGSCNLVEASSKESSWIAHMMEAQTQHNGKGVSVSLEYLEEPKQEFQVTTNWEASHGGFCNGQTFSDYGQVHQRSEASRASAEGGGESYAFGGRRSSGGRKSGEKRRTKAEKSISLPILRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLRKLQFVIDSVQGAEGAIQIGSFYSSFPELSSTNLSQSSNISDHSQKVHARPEHAGLYGHGGPTLKSPPSCCSQTSTIINDVLMAENPEASLKRAHTHVEAELHEDSKQQKALGEHPSAEVLPPLPENSGGAVRVKATFGDEKIRFSLQAKWGFRELQLEIARRFNLEDLSNVSLKYLDEEGEWVLLTCDADLDESKDTYRSSKSRTMRFALFQASPLNLANTFGSNSSS 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0007 887 MobiDBLite consensus disorder prediction 751 784 - -
Lele48g0007 887 Pfam PB1 domain 790 871 IPR000270 GO:0005515
Lele48g0007 887 CDD PB1_NLP 790 871 IPR034891 -
Lele48g0007 887 MobiDBLite consensus disorder prediction 564 604 - -
Lele48g0007 887 Pfam RWP-RK domain 607 654 IPR003035 -
Lele48g0007 887 Gene3D - 787 874 - -
Lele48g0007 887 PANTHER PROTEIN NLP8 61 884 IPR045012 GO:0003700
Lele48g0007 887 MobiDBLite consensus disorder prediction 692 729 - -
Lele48g0007 887 ProSiteProfiles PB1 domain profile. 789 872 IPR000270 GO:0005515
Lele48g0007 887 SUPERFAMILY CAD & PB1 domains 783 874 - -
Lele48g0007 887 SMART PB1_new 789 872 IPR000270 GO:0005515
Lele48g0007 887 MobiDBLite consensus disorder prediction 751 770 - -
Lele48g0007 887 ProSiteProfiles RWP-RK domain profile. 593 674 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0007 Lele-ChrLele48 774294 777396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele48g0007 10 883 NLP Transcription Factor Family AT4G35270 44.305 0.0 731
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lele48g0007 PB1 1.1e-17 CL0072