Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1287 ATGACAGATTTTCAACCGCTACAGCAGAAGCCTGAATCCACTGATGCCCATGCTGAGTTTGAACGTGGGCTGGAGGACTTTATGCGGGGCCACTTGGACGATTGCATGTCCTTTGCTTCGTGTAGTTCTGCCCGAACACAGGATGGGGAGGATGATGAAGTTGATCAGCTAGTTAGGAGGAGAAGAAGATCTGATCTTGAGGGGGATGATTTAGCAGAGTCATCTGCTGCACGCCGCCGCCACTCACGGATTTTGAGCAGATGGGCTGCCCATCAGGCCCAAGAGATGATAACCACAATTGAGAGGAGGAATCGGGAGTCTGAGTTGATGGCACTTGCAGGACTACACACAGTCTCAATGTTGGACTCCTCTTTTTTGAGGGGATCACAGACTCCACCTTCTGGCCAGGAGGGCGCCGTTGAGAGGCCCAGCACTCAGGCTTCTGCAATTCTTCAGATGTGGCGTGGATTGGAGGATGAACACTTACTTAATCGGGCACGTGGAAGAATGAGGGAAAGGTTGCGTCAACAAAGGGTTGCTGACTCTAATGCCAATGGATCAAGTACCATGTCCGATAGTCGGGGAAGTGAGAACCAGGGGAGTTTGGTGGATGCAAGTGAAAGTGAAAATGATTATGGGACCTGGTCACATGATCAGATTGAATCACAGCATGAAAATGGTGACCATAATGTGTCTAGCAGGGAGCAATCTCCTGATCTTGGTGAAGTTGAGAGGGAGAGAGTTCGACAGATTGTGCGGGGATGGATGGAAAGTGGCATCAGTGATCATTCATTTAATGCAAGTCAGAGAAACAATAATTGCAGAGCAGAGTGGCTTGGTGAAACAGAGCGTGAAAGAGTAAGGATTGTCAGGGAGTGGGTGCAAATGACAAGTCAGCAGCGAGGCTCTCGTGGGAGCGGGAGGGATGGTCAAGACACTGAAAGTGGTTCTCGAGTTGAGAGAGCCCGTGATGGATTGTTAACTGAGCATGATGAGGGCCAGCCAGAGCATGTACGCAGAGATTTGTTGAGGTTGCGTGGAAGACAAGCTCTGGTTGATTTGCTTGTGAGGGTTGAAAGGGAAAGACAAAGAGAGCTGCAGGGCTTGTTGGAGCACCGCGCTGTTTCTGATTTTGCTCATCGTAATCGCATTCAGTCATTACTCAGAGGTAGATTCCTCCGAAATGAAAGAACTATAGAAGATGAGAGGCCTCCTTCTGTGGCTGCAAATGAATTAGTTCAGTTAAGACAACGTCACACAGTCTCTGGTTTAAGGTTGCCTCTGTTTGCTGCTCAGAGACAGATTTTATTTCAGAAAGTTGAAATTTGCCTGAGAGAAGGGTTTCACTCAAGATTAGAAAATATTGTTCGTGGTCAAGCTAGCAGCAATTCTGATTCCACATCTAATAGTAATACCAGTGAAACTAGAAGTGATGTGAACCAAGAAAACAATTCAATAGATGCCCGGCATGAAAGTTTTGAACAAGGGCTGATTAGGAGCATGGAAACTGATGTGCAGCAGTTGGCTGATCAAACAGGAACTTCTGAAAGTAGCATTAGTGAGAGTATAAGTTGGCAAGAAACTAGTAATCAAGGAGGGAACTGGCAGGAACAAGTTACTGAAGATGGTCGTGGAAATTGGCAACAGAGAGCTTATGGTCCATTGAATCAGTTAAGAGATGGAAGTGCTGTTAGTGATTGGCGTCAGCATTCTCCGATAAATGGAGAAGGGGAAGATGTTCATCCACGAGAAGCTCAGGGAATTTGGCATGACGATAATTCAAGAGAAGCTGCAGGTAATTGGTCTGAAGACCCTTCTGGTCCTCCAAGGAATCGACGTGGTGTTCCTTTTAGGAGATTAAATAGATTTCATCCACCTGATGATGAAAATGTATATAACACGGAGCTTAGAGAACTTTTGAGCAGGAGAAGTGTTTCCAATCTTCTTCGCAGTGGTTTCCGTGAAAGTCTGGACCAATTAATCCAGTCATACGTGGAAAGGCAAAGTCGTGCACCTATTGATTGGGATTTGCACAGAAACTTGCCAACACCAAACCCTACCTCACCTGATAGGGATTCTGAACAACACGCAGATGAACGTAATGGGGTTCAACATGGCGTCATTAATAGGCCTTCTCTAGTGTTGCCATCTCCACCAGTTCCTCCGCCTCAACCACTTTGGCACCAGGACTTTCATCAGACTAGATGGTCTCGCCATAATATACATCGATCTGAAATTGAATGGGAGATAATCAATGATTTGAGATCAGATATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCTTGCATGGATATGCAACTGGAGTTACAGCGCTCTGTCAGACAGGAAGTGTCTGCAGCGCTGAATCGTTCAGCGGGTGAAAGTGGAATGGGGGCCGAGACATCTGAGGATGGGTCTAAATGTGGCCATGTGAAAAAAGGAACTTGTTGTGTTTGTTGTGATAGCCATATCGATTCGCTCTTGTACAGATGTGGGCACATGTGCACTTGTTCAAAATGTGCCAATGAATTAGTTCGTGGTGGAGGGAAGTGCCCTTTATGCCGAGCACCTATTGTGGAGGTGATCCGAGCATATTCCATTATGTAA 2625 0.4648 MTDFQPLQQKPESTDAHAEFERGLEDFMRGHLDDCMSFASCSSARTQDGEDDEVDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAAHQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQTPPSGQEGAVERPSTQASAILQMWRGLEDEHLLNRARGRMRERLRQQRVADSNANGSSTMSDSRGSENQGSLVDASESENDYGTWSHDQIESQHENGDHNVSSREQSPDLGEVERERVRQIVRGWMESGISDHSFNASQRNNNCRAEWLGETERERVRIVREWVQMTSQQRGSRGSGRDGQDTESGSRVERARDGLLTEHDEGQPEHVRRDLLRLRGRQALVDLLVRVERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTIEDERPPSVAANELVQLRQRHTVSGLRLPLFAAQRQILFQKVEICLREGFHSRLENIVRGQASSNSDSTSNSNTSETRSDVNQENNSIDARHESFEQGLIRSMETDVQQLADQTGTSESSISESISWQETSNQGGNWQEQVTEDGRGNWQQRAYGPLNQLRDGSAVSDWRQHSPINGEGEDVHPREAQGIWHDDNSREAAGNWSEDPSGPPRNRRGVPFRRLNRFHPPDDENVYNTELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQSRAPIDWDLHRNLPTPNPTSPDRDSEQHADERNGVQHGVINRPSLVLPSPPVPPPQPLWHQDFHQTRWSRHNIHRSEIEWEIINDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGESGMGAETSEDGSKCGHVKKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSIM 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1287 874 MobiDBLite consensus disorder prediction 675 698 - -
Lele47g1287 874 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 872 IPR013083 -
Lele47g1287 874 MobiDBLite consensus disorder prediction 505 542 - -
Lele47g1287 874 Pfam Zinc finger, C3HC4 type (RING finger) 819 866 - -
Lele47g1287 874 Coils Coil 751 771 - -
Lele47g1287 874 MobiDBLite consensus disorder prediction 593 621 - -
Lele47g1287 874 MobiDBLite consensus disorder prediction 459 486 - -
Lele47g1287 874 SUPERFAMILY RING/U-box 821 867 - -
Lele47g1287 874 MobiDBLite consensus disorder prediction 126 146 - -
Lele47g1287 874 MobiDBLite consensus disorder prediction 179 220 - -
Lele47g1287 874 MobiDBLite consensus disorder prediction 296 337 - -
Lele47g1287 874 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 110 874 - -
Lele47g1287 874 MobiDBLite consensus disorder prediction 169 243 - -
Lele47g1287 874 CDD mRING-HC-C3HC5_NEU1 821 861 - -
Lele47g1287 874 MobiDBLite consensus disorder prediction 307 337 - -
Lele47g1287 874 MobiDBLite consensus disorder prediction 459 482 - -
Lele47g1287 874 ProSiteProfiles Zinc finger RING-type profile. 822 861 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1287 Lele-ChrLele47 18012466 18017330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g1287 799 868 C3H Transcription Factor Family AT3G06140 37.143 4.14e-07 51.2