Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1261 ATGGATCCAAAAGAAAACCTTTGTGCTAACACCTGGGCAAGGTCCTCGTCGTTGAACTCTTTGGGGAATGGATTGCATGTTAATTTGTCATCAGAGACTCCTTCTTTTCCCAATCTCGGTTTGCAGCATAATCAACCGTGGGATGTTCCCTCTATTCCAGATTATGGCCTCGGTACTGAAGCTCCTTTCAAAGAATTCAACCAACTCTCTCAAACCCAACCTTTCCTTTCCAGTGACTCTAACAAAGACATTAAGATCCCTGCTCAAGAAAATTGTCAGATGAGTGACACATCACAGACTGATAAACTCCCCAATTGGGACCCCAGTGTGATGTTGAATAATTTGTCTTTTCTGGAAGAAAAGATTCATCAGCTCCAGGACCTTGTACACCTGATTGTTGGTCGGAAAGGCCAATCTTTTGTTCAACCTGATGAAATTGTTGTGCAGGAACAACAGCTCATTACAGCTGATCTTACATCAATTATTGTCCAGTTGATTTCTACTGCAGGTAGTCTTCTCCCTTCTGTCAGGCATACCCTTAAAAATACGAGTCTATCGGTTGGACATCTTGGCCAGCTTCAGGAGCATGCTATTCCTTCTGGATCTGGTGGTCCGAGTACTAGTGCTCATCCACAAAATAATAGTGCAAATAAAAAGTCTGATGAGTCCACTCAGATTGATCTGCCCAAGGGTTGTGACATGGAGCAAAACTGCAATGTGGAAGAGCATGAATCAAAAGATGAAGACGTGGAGGAGGGTGAGAACCTTCCTCCTGGGTCCTATGAGATTTTACAGTTAGAAAAAGAAGAAATCCTGGCACCTCATACTCACTTCTGTACAATTTGTGGGAAGGGATTCAAGCGAGATGCAAATCTTCGGATGCACATGAGAGGTCACGGTGACGAATACAAAACCCCAGCAGCACTCGCTAAACCTAACAAAGAATCTGGGCCCGAACCAAAGCTTATAAAGAGATATTCCTGCCCCTATGCAGGCTGCAAGCGTAACAAGGATCACAAGAAGTTTCAACCTCTGAAGACGATCTTATGTGTCAAAAATCATTACAAAAGAACACACTGTGACAAAAGTTACATTTGTAGCAGGTGCCACACAAAGAAGTTTTCTGTCATGGCTGATCTAAAAACACATGAAAAACACTGTGGAAAGGACAAATGGCTCTGTTCATGTGGCACAACATTTTCGAGGAAAGACAAGCTTTTTGGGCACATTGCTCTATTCCAAGGTCATACACCAGCCATTCCCTTAGATGATGCAAAAGCACCAGCTGTGCCACCTGATCTTGAAAGCAAAGAAAACAGTAGTAAGGTAGAAGGTGTAAACTTGAGTTTTGCATCAAATCCTTCTGGAGTGAATGGAGTTCAAAACATCATGGATTTGAAAGGTGATATTGATGATCCTATTAATTATTTATCGTCGTTGAACTTTGATACCTGTAACTTTGGTGGCTTGAATGAATTCCCACGACCTCCATTTGAAGACTCGGAAGGTTCATTCTCCTTCATCATGCCTGGATCTTTCAGTTACACTCAGAAGACTGGAGGAGAAGCAGATTCTGATAATCTTTAG 1587 0.4241 MDPKENLCANTWARSSSLNSLGNGLHVNLSSETPSFPNLGLQHNQPWDVPSIPDYGLGTEAPFKEFNQLSQTQPFLSSDSNKDIKIPAQENCQMSDTSQTDKLPNWDPSVMLNNLSFLEEKIHQLQDLVHLIVGRKGQSFVQPDEIVVQEQQLITADLTSIIVQLISTAGSLLPSVRHTLKNTSLSVGHLGQLQEHAIPSGSGGPSTSAHPQNNSANKKSDESTQIDLPKGCDMEQNCNVEEHESKDEDVEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPNKESGPEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYICSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDAKAPAVPPDLESKENSSKVEGVNLSFASNPSGVNGVQNIMDLKGDIDDPINYLSSLNFDTCNFGGLNEFPRPPFEDSEGSFSFIMPGSFSYTQKTGGEADSDNL 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1261 528 ProSiteProfiles Zinc finger C2H2 type domain profile. 277 304 IPR013087 -
Lele47g1261 528 ProSitePatterns Zinc finger C2H2 type domain signature. 279 299 IPR013087 -
Lele47g1261 528 SMART c2h2final6 364 386 IPR013087 -
Lele47g1261 528 SMART c2h2final6 326 359 IPR013087 -
Lele47g1261 528 SMART c2h2final6 277 299 IPR013087 -
Lele47g1261 528 MobiDBLite consensus disorder prediction 199 222 - -
Lele47g1261 528 SUPERFAMILY beta-beta-alpha zinc fingers 275 302 IPR036236 -
Lele47g1261 528 Gene3D Classic Zinc Finger 261 329 - -
Lele47g1261 528 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 90 500 IPR044300 GO:0010044|GO:0010447
Lele47g1261 528 MobiDBLite consensus disorder prediction 195 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1261 Lele-ChrLele47 17860790 17862376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g1261 246 526 C2H2 Transcription Factor Family AT1G34370 70.139 3.24e-140 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele47g1261 None None None