Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1244 ATGGGTTTTGAATCAGAATCCGAGTGTTTCAGCAAAATGATGGCTTCGATGCCGGGGTTTCGCTTCCACCCTACGGACGAGGAGTTGATCATGTATTATCTGAAGAGGAAGATGTCTGGGAGGAAGTTGAAGCTCGACGTGATCCGGGAGACTGACGTCTACAAGTGGGACCCTGAGGAATTGCCTGCGCAATCTGGACTAAAAACTGGAGATAGACAATGGTTTTATTTCAGTCCTAGAGATAGGAAGTACCCTAATGCTGCAAGGGCAAGTAGAGCAACAAGACATGGGTACTGGAAAGCTACAGGAAAAGATCGTAATGTGATATACACTTCCCGAACCGTTGGAGTTAAAAAGACATTGGTTTTCTATAAAGGCAGAGCTCCTAATGGTGAGCGCACTGATTGGGTTATGCATGAGTACACCTTGGATGAACAAGAGCTTCAAAGATGCCAAGGCATTAAGGACTATTTTGCACTCTACAAGCTTTACAGGAAAAGCGGACCTGGCCCTAAAAACGGTGAGCAGTATGGTGCTCCATTTAATGAAGAAAAGTGGGCAGATGACGATCTTGTAGATTGCAATGTAAACTCAGCTGACACTGAAGTTCCAACACAGCAACGTGATGGTGTTACTTCGGTTGATACTGTCAATGTTAATGATCCAGTGCAGCCATTGCTTGATGATGAAATTGAGGAGATCCTGAAGAAAATTATGGATGACGAGTCCCTCCTCGAACAACAAAATGTGAACAGTCATCCTGCCTTACATCTGGGGGTTGCTGAGGAAATGCAGAATGACGCGGTTGATCGATTCTGTAGGGAAGTCATGTTTCCTGAGCCATTTGGAATGTTTCACTCAAATGGTTTTCAGCAATGTGGAGTGGGTCCCAGTTCTGACTTCCCTGAATCAGCTATTTCTCACCTGCAAATGTCTGAAGCTCCTGAGGTCACTTCTACTCCCAACACTAAAGGAGCAGAAACTGGCTTGTGTGAGGATGACTTCTTGGAATTGGATGATCTCAATGGTCCTGAACATGCTTTGCCAAACATCAATAAGCCTGTGGAGAACCTGCAGTTTGAAGATGGATTAAGTGAACTTGATCTGTACCATGATGCGCAGATGTTTCTTCATGACATGGGGCCGATTTCACATCCATATATGAACACTTTGGATAGTGCTATTGCGGATCAAAATTATGAGCTGCTGTTGAATCAAGAAAATGCAAATCAAACTGGTGAACTCATTATGCATGCTCAAAGAAACATCCTGCATTCAGCGGAACACATCAATGTTTCTACATCTCTTCCTACATCAGGTATATCCAACAGAACAAGATACAGGGTTGGTGGTTCAGCTGAACTGCCAAATAATGATTTTACTGTGTCTGATTTGGATGAAGATGCAATCATCATATCTCTGTTGTGTCCGAGGACATCACACTTTATTGCTTTTGGTTGA 1461 0.4353 MGFESESECFSKMMASMPGFRFHPTDEELIMYYLKRKMSGRKLKLDVIRETDVYKWDPEELPAQSGLKTGDRQWFYFSPRDRKYPNAARASRATRHGYWKATGKDRNVIYTSRTVGVKKTLVFYKGRAPNGERTDWVMHEYTLDEQELQRCQGIKDYFALYKLYRKSGPGPKNGEQYGAPFNEEKWADDDLVDCNVNSADTEVPTQQRDGVTSVDTVNVNDPVQPLLDDEIEEILKKIMDDESLLEQQNVNSHPALHLGVAEEMQNDAVDRFCREVMFPEPFGMFHSNGFQQCGVGPSSDFPESAISHLQMSEAPEVTSTPNTKGAETGLCEDDFLELDDLNGPEHALPNINKPVENLQFEDGLSELDLYHDAQMFLHDMGPISHPYMNTLDSAIADQNYELLLNQENANQTGELIMHAQRNILHSAEHINVSTSLPTSGISNRTRYRVGGSAELPNNDFTVSDLDEDAIIISLLCPRTSHFIAFG 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1244 486 Pfam No apical meristem (NAM) protein 18 143 IPR003441 GO:0003677|GO:0006355
Lele47g1244 486 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Lele47g1244 486 Gene3D NAC domain 25 168 IPR036093 GO:0003677|GO:0006355
Lele47g1244 486 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 241 - -
Lele47g1244 486 SUPERFAMILY NAC domain 12 166 IPR036093 GO:0003677|GO:0006355
Lele47g1244 486 FunFam Nac domain-containing protein 86 25 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1244 Lele-ChrLele47 17726730 17728979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g1244 1 435 NAC Transcription Factor Family AT1G34190 46.429 9.43e-108 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele47g1244 NAM 2.9e-36 No_clan