Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g1220 ATGCAACAATTGTTCATCTCATATCGCATTCGCGCATTCAGAAAAGAGCCCCCCAATAGAACCCCAGCAAAATCAGAGTCCAATTGAAATCTCTCTGACACGTCGGCATCTCTGTGGGGTCAAGTCTTAAGTGGCAGGATCCTAACGGTTATGATGGAGATAGTGCGTTCTCCATCACCAGATTCGGGTTTATTCGTAAAATTGTTATTGTCTATTCCAATTACTGCACATGTTATGTTATATTTGAGTCAAGTGACATGGAAGCTGTTGATTTTGAAGGATGCTCATGTTGAAGAGTTGCCTCAATACATACATATAACGCAAAATGAATTTTTGAATAGAAGGCATGGGAAGCAGAAGGAGGAGGATATTGCAATATGTGAATGCAAATATGATGCTAGTGATCCTGATAGTGCATGTGGGGATGGGTGTCTTAACGTATTGACCAGTTCTGAATGCACCCTTGGCTATTGCCCGTGTGGCATCTTTTGCAAAAATCAGAGATTTCAGCAGTGTGAATATGCAAAAACAAAGTTGTTCAAAACCGAAGGCCGGGGATGGGGTCTTTTGGCTGGTGAGAATATTAAGGCAGGCCAATTTATCATTGAATACTGTGGAGAAGTAATTTCATGGAAAGAAGCCAAGCGAAGAGCCCAGGCTTATGAAACTCAAGGTCTAAAGGATGCATTCATTATTTGTCTTAATGCCTCTGAATCCATTGATGCAACTAGAAAGGGAAGCCTTGGTAGATTTATAAATCATTCATGTCAGCCAAATTGTGAGACAAGGAAATGGAATGTCTTGGGTGATTTAAGAGTTGGGATATTTGCAAAACAAGATATACCTGTTGGAGCTGAACTGGCATATGATTATAATTTTGAATGGTATGGTGGCACAAAGGTTCGTTGCCTCTGTGGTGCAGCCAAATGTTCTGGATTCCTTGGAGCAAAATCTCGTGGTTTTCAGGAAGATACATATTTATGGGAAGATGATGATGAAAGATACACTGTTGAGAAAATTCCAGTATATGACTCCGCAGAGGATGAGCCTCCCTCAAAGGTCCTTAGAAGCTTACATTCTGACATTCCTGGTATGCAAGTTAATGGAAAAACCGAACACTCCATGGACGTTGGCATAAAACATGAACAACTGTCAGAATCAACTGCTTTTAGCATTCAGCCGCTTGCATCAGTTCCAACAAAGGGTTTACATGTCAGTCCGATAAAATCTGAAATAGAAATTGATGACGATTTGAAATTGTACTCTAGAGCTACTCAGCAGTCCTTTCCACAAAACAATGCAATGATATCACGAATCAGAAGTAATACCGCTGCCCGAAACTATCGCACTGAACCTAGGTCCATATCTGCCATAAAATCTAAGAAATTTGACGGAAGGTTTAAAAATATCACACAGAAGCAAGTCGATGTGAAGTCTGCTGCTGAATATTTAGTATCAAAAGAAGCACAAGAGGAGATTTTAAGATACGAGGAAATGAAGAATGAGGCGACTTGTGGTCTTGATAAGTTATACAACGAAATACGACCAGCCATTGAAGAACATGAGAGGGATAGCCAAGACAGTGTATCCACGAGTGTAGCAGAGAAGTGGATTGAAGCTTGCTGTTCAAAATTGAAGGCGGAGTTGGACCTTTACTCCTCCATTGTCAAGAATTTTGCCTGCACTTCTCTCAAGCCTCGTGGCCTTCCAAATCCTCCTTCCTCTCAAGTTGATAATGAAAACGAAAATAAGTTGGAAGAAGACGATTCCAACCTTAAGCTAATCCAGGAATTTCGAAACCTCACTCATCATGATCATCCAGCTTTGTACAAGGCCATATCAGATTTCAATAATGGCATACCTATGGAGCTGTTGTTGAAACTAAAGGGTTTGATACTTGTGTATCAGATATGCGCATCTATCTAG 1926 0.406 MQQLFISYRIRAFRKEPPNRTPAKSESNXNLSDTSASLWGQVLSGRILTVMMEIVRSPSPDSGLFVKLLLSIPITAHVMLYLSQVTWKLLILKDAHVEELPQYIHITQNEFLNRRHGKQKEEDIAICECKYDASDPDSACGDGCLNVLTSSECTLGYCPCGIFCKNQRFQQCEYAKTKLFKTEGRGWGLLAGENIKAGQFIIEYCGEVISWKEAKRRAQAYETQGLKDAFIICLNASESIDATRKGSLGRFINHSCQPNCETRKWNVLGDLRVGIFAKQDIPVGAELAYDYNFEWYGGTKVRCLCGAAKCSGFLGAKSRGFQEDTYLWEDDDERYTVEKIPVYDSAEDEPPSKVLRSLHSDIPGMQVNGKTEHSMDVGIKHEQLSESTAFSIQPLASVPTKGLHVSPIKSEIEIDDDLKLYSRATQQSFPQNNAMISRIRSNTAARNYRTEPRSISAIKSKKFDGRFKNITQKQVDVKSAAEYLVSKEAQEEILRYEEMKNEATCGLDKLYNEIRPAIEEHERDSQDSVSTSVAEKWIEACCSKLKAELDLYSSIVKNFACTSLKPRGLPNPPSSQVDNENENKLEEDDSNLKLIQEFRNLTHHDHPALYKAISDFNNGIPMELLLKLKGLILVYQICASI 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g1220 641 ProSiteProfiles SET domain profile. 175 292 IPR001214 GO:0005515
Lele47g1220 641 PANTHER SET DOMAIN PROTEINS 95 590 - -
Lele47g1220 641 Pfam SET domain 186 292 IPR001214 GO:0005515
Lele47g1220 641 SMART PostSET_3 299 315 IPR003616 -
Lele47g1220 641 Gene3D SET domain 51 328 IPR046341 -
Lele47g1220 641 SUPERFAMILY SET domain 100 312 IPR046341 -
Lele47g1220 641 FunFam Histone-lysine N-methyltransferase 90 327 - -
Lele47g1220 641 Pfam AWS domain 135 172 IPR006560 GO:0005634|GO:0018024
Lele47g1220 641 SMART shorttest3 122 174 IPR006560 GO:0005634|GO:0018024
Lele47g1220 641 ProSiteProfiles AWS domain profile. 122 173 IPR006560 GO:0005634|GO:0018024
Lele47g1220 641 ProSiteProfiles Post-SET domain profile. 299 315 IPR003616 -
Lele47g1220 641 SMART set_7 175 298 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g1220 Lele-ChrLele47 17569480 17577936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele47g1220 157 314 C2H2 Transcription Factor Family AT2G23740 33.523 1.60e-20 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele47g1220 SET 6.7e-19 No_clan